Towards a virtual fly brain

被引:12
作者
Armstrong, J. Douglas [1 ]
van Hemert, Jano I. [2 ]
机构
[1] Univ Edinburgh, Sch Informat, Inst Adapt & Neural Computat, Edinburgh EH8 9AB, Midlothian, Scotland
[2] Univ Edinburgh, Sch Informat, Natl E Sci Ctr, Edinburgh EH8 9AA, Midlothian, Scotland
来源
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES | 2009年 / 367卷 / 1896期
基金
英国工程与自然科学研究理事会;
关键词
Drosophila melanogaster; eScience; virtual brain; neuroinformatics; brain; DROSOPHILA; EXPRESSION; SYSTEM; TOOLS;
D O I
10.1098/rsta.2008.0308
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Models of the brain that simulate sensory input, behavioural output and information processing in a biologically plausible manner pose significant challenges to both computer science and biology. Here we investigated strategies that could be used to create a model of the insect brain, specifically that of Drosophila melanogaster that is very widely used in laboratory research. The scale of the problem is an order of magnitude above the most complex of the current simulation projects, and it is further constrained by the relative sparsity of available electrophysiological recordings from the fly nervous system. However fly brain research at the anatomical and behavioural levels offers some interesting opportunities that could be exploited to create a functional simulation. We propose to exploit these strengths of Drosophila central nervous system research to focus on a functional model that maps biologically plausible network architecture onto phenotypic data from neuronal inhibition and stimulation studies, leaving aside biophysical modelling of individual neuronal activity for future models until more data are available.
引用
收藏
页码:2387 / 2397
页数:11
相关论文
共 37 条
  • [11] FlyRNAi:: the Drosophila RNAi screening center database
    Flockhart, Ian
    Booker, Matthew
    Kiger, Amy
    Boutros, Michael
    Armknecht, Susan
    Ramadan, Nadire
    Richardson, Kris
    Xu, Andrew
    Perrimon, Norbert
    Mathey-Prevot, Bernard
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D489 - D494
  • [12] Hayworth K., 2006, Microsc. Microanal, V12, P86, DOI DOI 10.1017/S1431927606066268
  • [13] STRUCTURAL PLASTICITY IN THE DROSOPHILA BRAIN
    HEISENBERG, M
    HEUSIPP, M
    WANKE, C
    [J]. JOURNAL OF NEUROSCIENCE, 1995, 15 (03) : 1951 - 1960
  • [14] Mushroom body memoir: From maps to models
    Heisenberg, M
    [J]. NATURE REVIEWS NEUROSCIENCE, 2003, 4 (04) : 266 - 275
  • [15] Conditional modification of behavior in drosophila by targeted expression of a temperature-sensitive shibire allele in defined neurons
    Kitamoto, T
    [J]. JOURNAL OF NEUROBIOLOGY, 2001, 47 (02): : 81 - 92
  • [16] Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis
    Lee, T
    Luo, LQ
    [J]. NEURON, 1999, 22 (03) : 451 - 461
  • [17] Progress - A technicolour approach to the connectome
    Lichtman, Jeff W.
    Livet, Jean
    Sanes, Joshua R.
    [J]. NATURE REVIEWS NEUROSCIENCE, 2008, 9 (06) : 417 - 422
  • [18] Remote control of behavior through genetically targeted photostimulation of neurons
    Lima, SQ
    Miesenböck, G
    [J]. CELL, 2005, 121 (01) : 141 - 152
  • [19] The Blue Brain Project
    Markram, H
    [J]. NATURE REVIEWS NEUROSCIENCE, 2006, 7 (02) : 153 - 160
  • [20] Genetic methods for illuminating the function of neural circuits
    Miesenböck, G
    [J]. CURRENT OPINION IN NEUROBIOLOGY, 2004, 14 (03) : 395 - 402