Optical measurements of long-range protein vibrations

被引:168
作者
Acbas, Gheorghe [1 ]
Niessen, Katherine A. [1 ]
Snell, Edward H. [2 ]
Markelz, A. G. [1 ,2 ]
机构
[1] SUNY Buffalo, Dept Phys, Buffalo, NY 14260 USA
[2] SUNY Buffalo, Hauptman Woodward Med Res Inst, Dept Biol Struct, Buffalo, NY 14203 USA
来源
NATURE COMMUNICATIONS | 2014年 / 5卷
基金
美国国家科学基金会;
关键词
FREQUENCY RAMAN-SPECTRA; DYNAMICS; LYSOZYME; SPECTROSCOPY; HYDRATION; SIMULATIONS; SENSITIVITY; ABSORPTION; CRYSTALS; MOTIONS;
D O I
10.1038/ncomms4076
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Protein biological function depends on structural flexibility and change. From cellular communication through membrane ion channels to oxygen uptake and delivery by haemoglobin, structural changes are critical. It has been suggested that vibrations that extend through the protein play a crucial role in controlling these structural changes. While nature may utilize such long-range vibrations for optimization of biological processes, bench-top characterization of these extended structural motions for engineered biochemistry has been elusive. Here we show the first optical observation of long-range protein vibrational modes. This is achieved by orientation-sensitive terahertz near-field microscopy measurements of chicken egg white lysozyme single crystals. Underdamped modes are found to exist for frequencies >10 cm(-1). The existence of these persisting motions indicates that damping and intermode coupling are weaker than previously assumed. The methodology developed permits protein engineering based on dynamical network optimization.
引用
收藏
页数:7
相关论文
共 48 条
[11]   Terahertz dielectric assay of solution phase protein binding [J].
Chen, Jing-Yin ;
Knab, J. R. ;
Ye, Shuji ;
He, Yunfen ;
Markelz, A. G. .
APPLIED PHYSICS LETTERS, 2007, 90 (24)
[12]   Large oxidation dependence observed in terahertz dielectric response for cytochrome c [J].
Chen, JY ;
Knab, JR ;
Cerne, J ;
Markelz, AG .
PHYSICAL REVIEW E, 2005, 72 (04)
[13]   Far-infrared spectroscopy analysis of linear and cyclic peptides, and lysozyme [J].
Ding, Tao ;
Middelberg, Anton P. J. ;
Huber, Thomas ;
Falconer, Robert J. .
VIBRATIONAL SPECTROSCOPY, 2012, 61 :144-150
[14]   LOW-FREQUENCY RAMAN-SPECTRA OF LYSOZYME [J].
GENZEL, L ;
KEILMANN, F ;
MARTIN, TP ;
WINTERLING, G ;
YACOBY, Y ;
FROHLICH, H ;
MAKINEN, MW .
BIOPOLYMERS, 1976, 15 (01) :219-225
[15]   Photoactive Yellow Protein Terahertz Response: Hydration, Heating and Intermediate States [J].
George, Deepu K. ;
Knab, Joseph R. ;
He, Yunfen ;
Kumauchi, Masato ;
Birge, Robert R. ;
Hoff, Wouter D. ;
Markelz, Andrea G. .
IEEE TRANSACTIONS ON TERAHERTZ SCIENCE AND TECHNOLOGY, 2013, 3 (03) :288-294
[16]   FAR-INFRARED TIME-DOMAIN SPECTROSCOPY WITH TERAHERTZ BEAMS OF DIELECTRICS AND SEMICONDUCTORS [J].
GRISCHKOWSKY, D ;
KEIDING, S ;
VANEXTER, M ;
FATTINGER, C .
JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS, 1990, 7 (10) :2006-2015
[17]   All-atom modeling of anisotropic atomic fluctuations in protein crystal structures [J].
Hafner, Jeffrey ;
Zheng, Wenjun .
JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (14)
[18]   Multiple conformational changes in enzyme catalysis [J].
Hammes, GG .
BIOCHEMISTRY, 2002, 41 (26) :8221-8228
[19]   Evidence of Protein Collective Motions on the Picosecond Timescale [J].
He, Yunfen ;
Chen, J. -Y. ;
Knab, J. R. ;
Zheng, Wenjun ;
Markelz, A. G. .
BIOPHYSICAL JOURNAL, 2011, 100 (04) :1058-1065
[20]   COMPARISON OF STRUCTURES OF DRY AND WET HEN EGG-WHITE LYSOZYME MOLECULE AT 1.8A RESOLUTION [J].
KACHALOVA, GS ;
MOROZOV, VN ;
MOROZOVA, TY ;
MYACHIN, ET ;
VAGIN, AA ;
STROKOPYTOV, BV ;
NEKRASOV, YV .
FEBS LETTERS, 1991, 284 (01) :91-94