Designed α-Helical Tectons for Constructing Multicomponent Synthetic Biological Systems

被引:68
作者
Bromley, Elizabeth H. C. [1 ]
Sessions, Richard B. [2 ]
Thomson, Andrew R. [1 ]
Woolfson, Derek N. [1 ,2 ]
机构
[1] Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England
[2] Univ Bristol, Sch Med Sci, Dept Biochem, Bristol BS8 1TD, Avon, England
基金
英国工程与自然科学研究理事会;
关键词
COILED COILS; BUILDING-BLOCKS; DNA; SPECIFICITY; FOS; RNA;
D O I
10.1021/ja804231a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
One possible route to develop new synthetic-biological systems is to assemble discrete nanoscale objects from programmed peptide-based building blocks. We describe an algorithm to design such blocks based on the coiled-coil protein-folding motif. The success of the algorithm is demonstrated by the production of six peptides that form three target parallel, blunted-ended heterodimers in preference to any of the other promiscuous pairings and alternate configurations, for example, homodimers, sticky-ended assemblies, and antiparallel arrangements. The peptides were (inked to promote the assembly of larger, defined nanoscale rods, thus demonstrating that targeted peptide-peptide interactions can be specified in complex mixtures.
引用
收藏
页码:928 / +
页数:4
相关论文
共 23 条
[1]   DNA nanomachines [J].
Bath, Jonathan ;
Turberfield, Andrew J. .
NATURE NANOTECHNOLOGY, 2007, 2 (05) :275-284
[2]   Peptide and protein building blocks for synthetic biology: From programming biomolecules to self-organized biomolecular systems [J].
Bromley, Elizabeth H. C. ;
Channon, Kevin ;
Moutevelis, Efrosini ;
Woolfson, Derek N. .
ACS CHEMICAL BIOLOGY, 2008, 3 (01) :38-50
[3]   HELIX CAPPING PROPENSITIES IN PEPTIDES PARALLEL THOSE IN PROTEINS [J].
CHAKRABARTTY, A ;
DOIG, AJ ;
BALDWIN, RL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (23) :11332-11336
[4]   Calculation of hydrodynamic properties of globular proteins from their atomic-level structure [J].
de la Torre, JG ;
Huertas, ML ;
Carrasco, B .
BIOPHYSICAL JOURNAL, 2000, 78 (02) :719-730
[5]  
Demeler B, 2005, ANALYTICAL ULTRACENTRIFUGATION: TECHNIQUES AND METHODS, P210
[6]   Simultaneous directed assembly of three distinct heterodimeric coiled coils [J].
Diss, Maria L. ;
Kennan, Alan J. .
ORGANIC LETTERS, 2008, 10 (17) :3797-3800
[7]   Orthogonal recognition in dimeric coiled coils via buried polar-group modulation [J].
Diss, Maria L. ;
Kennan, Alan J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (04) :1321-1327
[8]   A self-assembled DNA bipyramid [J].
Erben, Christoph M. ;
Goodman, Russell P. ;
Turberfield, Andrew J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (22) :6992-+
[9]   Predicting specificity in bZIP coiled-coil protein interactions [J].
Fong, JH ;
Keating, AE ;
Singh, M .
GENOME BIOLOGY, 2004, 5 (02)
[10]   Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication [J].
Goodman, RP ;
Schaap, IAT ;
Tardin, CF ;
Erben, CM ;
Berry, RM ;
Schmidt, CF ;
Turberfield, AJ .
SCIENCE, 2005, 310 (5754) :1661-1665