Methods of studying soil microbial diversity

被引:615
作者
Kirk, JL
Beaudette, LA
Hart, M
Moutoglis, P
Khironomos, JN
Lee, H
Trevors, JT [1 ]
机构
[1] Univ Guelph, Ontario Agr Coll, Dept Environm Biol, Guelph, ON N1G 2W1, Canada
[2] Univ Guelph, Dept Bot, Guelph, ON N1G 2W1, Canada
[3] PremierTech, Riviere Du Loup, PQ G5R 6C1, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
arbuscular mycorrhizal fungi (AMF); bacteria; biology; diversity; DNA; ecology; fungi; molecular ecology; soil;
D O I
10.1016/j.mimet.2004.04.006
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Soil microorganisms, such as bacteria and fungi, play central roles in soil fertility and promoting plant health. This review examines and compares the various methods used to study microbial diversity in soil. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:169 / 188
页数:20
相关论文
共 140 条
[21]   Functional diversity and community structure of micro-organisms in three arctic soils as determined by sole-carbon-source-utilization [J].
Derry, AM ;
Staddon, WJ ;
Kevan, PG ;
Trevors, JT .
BIODIVERSITY AND CONSERVATION, 1999, 8 (02) :205-221
[22]  
Dix N.y Webster., 1995, FUNGAL ECOL
[23]   Mycelium of Arbuscular Mycorrhizal fungi (AMF) from different genera: form, function and detection [J].
Dodd, JC ;
Boddington, CL ;
Rodriguez, A ;
Gonzalez-Chavez, C ;
Mansur, I .
PLANT AND SOIL, 2000, 226 (02) :131-151
[24]  
Duineveld BM, 1998, APPL ENVIRON MICROB, V64, P4950
[25]   Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA [J].
Duineveld, BM ;
Kowalchuk, GA ;
Keijzer, A ;
van Elsas, JD ;
van Veen, JA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (01) :172-178
[26]   Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis [J].
Dunbar, J ;
Ticknor, LO ;
Kuske, CR .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (07) :2943-2950
[27]  
El Fantroussi S, 1999, APPL ENVIRON MICROB, V65, P982
[28]  
ELLIS RJ, 1995, FEMS MICROBIOL ECOL, V16, P9, DOI 10.1111/j.1574-6941.1995.tb00263.x
[29]   Cultivation-dependent and -independent approaches for determining bacterial diversity in fleavy-metal-contaminated soil [J].
Ellis, RJ ;
Morgan, P ;
Weightman, AJ ;
Fry, JC .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (06) :3223-3230
[30]   Direct interaction between the arbuscular mycorrhizal fungus Glomus intraradices and different rhizosphere microorganisms [J].
Filion, M ;
St-Arnaud, M ;
Fortin, JA .
NEW PHYTOLOGIST, 1999, 141 (03) :525-533