A novel QSAR model for predicting induction of apoptosis by 4-aryl-4H-chromenes

被引:83
作者
Afantitis, Antreas
Melagraki, Georgia
Sarimveis, Haralambos [1 ]
Koutentis, Panayiotis A.
Markopoulos, John
Igglessi-Markopoulou, Olga
机构
[1] Natl Tech Univ Athens, Sch Chem Engn, Athens, Greece
[2] Univ Cyprus, Dept Chem, CY-1678 Nicosia, Cyprus
[3] Univ Athens, Dept Chem, GR-10680 Athens, Greece
关键词
apoptosis; chromenes; molecular modeling; QSAR;
D O I
10.1016/j.bmc.2006.05.061
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A linear quantitative structure-activity relationship (QSAR) model is presented for modeling and predicting induction of apoptosis by 4-aryl-4H-chromenes. The model was produced by using the multiple linear regression (MLR) technique on a database that consists of 43 recently discovered 4-aryl-4H-chromenes. Among the 61 different physicochemical, topological, and structural descriptors that were considered as inputs to the model, seven variables were selected using the elimination selection-stepwise regression method (ES-SWR). The physical meaning of each descriptor is discussed. The accuracy of the proposed MLR model is illustrated using the following evaluation techniques: cross-validation, validation through an external test set, and Y-randomization. Furthermore, the domain of applicability which indicates the area of reliable predictions is defined. (c) 2006 Elsevier Ltd. All rights reserved.
引用
收藏
页码:6686 / 6694
页数:9
相关论文
共 33 条
[1]   A novel simple QSAR model for the prediction of anti-HIV activity using multiple linear regression analysis [J].
Afantitis, Antreas ;
Melagraki, Georgia ;
Sarimveis, Haralambos ;
Koutentis, Panayiotis A. ;
Markopoulos, John ;
Igglessi-Markopoulou, Olga .
MOLECULAR DIVERSITY, 2006, 10 (03) :405-414
[2]   The better predictive model:: High q2 for the training set or low root mean square error of prediction for the test set? [J].
Aptula, AO ;
Jeliazkova, NG ;
Schultz, TW ;
Cronin, MTD .
QSAR & COMBINATORIAL SCIENCE, 2005, 24 (03) :385-396
[3]  
Atkinson AC., 1985, Plots, transformations and regression
[4]  
an introduction to graphical methods of diagnostic regression analysis
[6]  
Efroymson MA, 1960, MULTIPLE REGRESSION
[7]   Beware of q2! [J].
Golbraikh, A ;
Tropsha, A .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2002, 20 (04) :269-276
[8]   Selective, reversible caspase-3 inhibitor is neuroprotective and reveals distinct pathways of cell death after neonatal hypoxic-ischemic brain injury [J].
Han, BH ;
Xu, DG ;
Choi, JJ ;
Han, YX ;
Xanthoudakis, S ;
Roy, S ;
Tam, J ;
Vaillancourt, J ;
Colucci, J ;
Siman, R ;
Giroux, A ;
Robertson, GS ;
Zamboni, R ;
Nicholson, DW ;
Holtzman, DM .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (33) :30128-30136
[9]   QSAR of apoptosis induction in various cancer cells [J].
Hansch, C ;
Jazirehi, A ;
Mekapati, SB ;
Garg, R ;
Bonavida, B .
BIOORGANIC & MEDICINAL CHEMISTRY, 2003, 11 (13) :3015-3019
[10]   Quantitative structure-activity relationships of phenolic compounds causing apoptosis [J].
Hansch, C ;
Bonavida, B ;
Jazirehi, AR ;
Cohen, JJ ;
Milliron, C ;
Kurup, A .
BIOORGANIC & MEDICINAL CHEMISTRY, 2003, 11 (04) :617-620