Polyploidy and genome evolution in plants

被引：8

作者：

Soltis, Pamela S. ^{[1
,2
]}

Marchant, D. Blaine ^{[1
,3
]}

Van de Peer, Yves ^{[4
,5
,6
,7
]}

Soltis, Douglas E. ^{[1
,2
,3
]}

机构：

[1] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA

[2] Univ Florida, Genet Inst, Gainesville, FL 32610 USA

[3] Univ Florida, Dept Biol, Gainesville, FL 32611 USA

[4] Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9052 Ghent, Belgium

[5] Univ Ghent VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium

[6] Univ Ghent, Bioinformat Inst Ghent, B-9052 Ghent, Belgium

[7] Univ Pretoria, Genom Res Inst, ZA-0028 Pretoria, South Africa

来源：

CURRENT OPINION IN GENETICS & DEVELOPMENT | 2015年 / 35卷

基金：

欧洲研究理事会; 美国国家科学基金会;

关键词：

DUPLICATE GENE EVOLUTION; TRAGOPOGON-MISCELLUS; BALANCE HYPOTHESIS; DIVERSITY; SIZE; POPULATIONS; MECHANISMS; DIVERSIFICATION; AUTOPOLYPLOIDY; CONSEQUENCES;

D O I：

10.1016/j.gde.2015.11.003

中图分类号：

Q2 [细胞生物学];

学科分类号：

071009 ; 090102 ;

摘要：

Plant genomes vary in size and complexity, fueled in part by processes of whole-genome duplication (WGD; polyploidy) and subsequent genome evolution. Despite repeated episodes of WGD throughout the evolutionary history of angiosperms in particular, the genomes are not uniformly large, and even plants with very small genomes carry the signatures of ancient duplication events. The processes governing the evolution of plant genomes following these ancient events are largely unknown. Here, we consider mechanisms of diploidization, evidence of genome reorganization in recently formed polyploid species, and macroevolutionary patterns of WGD in plant genomes and propose that the ongoing genomic changes observed in recent polyploids may illustrate the diploidization processes that result in ancient signatures of WGD over geological timescales.

引用

页码：119 / 125

页数：7

共 85 条

[11] Transcriptomic Shock Generates Evolutionary Novelty in a Newly Formed, Natural Allopolyploid Plant [J].

Buggs, Richard J. A. ;

Zhang, Linjing ;

Miles, Nicholas ;

Tate, Jennifer A. ;

Gao, Lu ;

Wei, Wu ;

Schnable, Patrick S. ;

Barbazuk, W. Brad ;

Soltis, Pamela S. ;

Soltis, Douglas E. .

CURRENT BIOLOGY, 2011, 21 (07) :551-556

[12] Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus [J].

Buggs, Richard J. A. ;

Elliott, Natalie M. ;

Zhang, Linjing ;

Koh, Jin ;

Viccini, Lyderson F. ;

Soltis, Douglas E. ;

Soltis, Pamela S. .

NEW PHYTOLOGIST, 2010, 186 (01) :175-183

[13] Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping [J].

Buggs, Richard J. A. ;

Chamala, Srikar ;

Wu, Wei ;

Gao, Lu ;

May, Gregory D. ;

Schnable, Patrick S. ;

Soltis, Douglas E. ;

Soltis, Pamela S. ;

Barbazuk, W. Brad .

MOLECULAR ECOLOGY, 2010, 19 :132-146

[14] The genome sequence of the orchid Phalaenopsis equestris [J].

Cai, Jing ;

Liu, Xin ;

Vanneste, Kevin ;

Proost, Sebastian ;

Tsai, Wen-Chieh ;

Liu, Ke-Wei ;

Chen, Li-Jun ;

He, Ying ;

Xu, Qing ;

Bian, Chao ;

Zheng, Zhijun ;

Sun, Fengming ;

Liu, Weiqing ;

Hsiao, Yu-Yun ;

Pan, Zhao-Jun ;

Hsu, Chia-Chi ;

Yang, Ya-Ping ;

Hsu, Yi-Chin ;

Chuang, Yu-Chen ;

Dievart, Anne ;

Dufayard, Jean-Francois ;

Xu, Xun ;

Wang, Jun-Yi ;

Wang, Jun ;

Xiao, Xin-Ju ;

Zhao, Xue-Min ;

Du, Rong ;

Zhang, Guo-Qiang ;

Wang, Meina ;

Su, Yong-Yu ;

Xie, Gao-Chang ;

Liu, Guo-Hui ;

Li, Li-Qiang ;

Huang, Lai-Qiang ;

Luo, Yi-Bo ;

Chen, Hong-Hwa ;

Van de Peer, Yves ;

Liu, Zhong-Jian .

NATURE GENETICS, 2015, 47 (01) :65-+

[15] Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids [J].

Chen, Z. Jeffrey .

ANNUAL REVIEW OF PLANT BIOLOGY, 2007, 58 :377-406

[16] Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae) [J].

Chester, Michael ;

Gallagher, Joseph P. ;

Symonds, V. Vaughan ;

Cruz da Silva, Ana Veruska ;

Mavrodiev, Evgeny V. ;

Leitch, Andrew R. ;

Soltis, Pamela S. ;

Soltis, Douglas E. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (04) :1176-1181

[17] The advantages and disadvantages of being polyploid [J].

Comai, L .

NATURE REVIEWS GENETICS, 2005, 6 (11) :836-846

[18] Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time [J].

Conant, Gavin C. ;

Birchler, James A. ;

Pires, J. Chris .

CURRENT OPINION IN PLANT BIOLOGY, 2014, 19 :91-98

[19]

DARLINGTON C. D., 1937

[20] Redundancy and rewiring of genetic networks following genome-wide duplication events [J].

De Smet, Riet ;

Van de Peer, Yves .

CURRENT OPINION IN PLANT BIOLOGY, 2012, 15 (02) :168-176

← 1 2 3 4 5 6 7 8 9 →