Prediction of anti-plasmodial activity of Artemisia annua extracts:: application of 1H NMR spectroscopy and chernometrics

被引:54
作者
Bailey, NJC
Wang, YL
Sampson, J
Davis, W
Whitcombe, I
Hylands, PJ
Croft, SL
Holmes, E
机构
[1] SCYNEXIS Europe Ltd, Ongar CM5 0GS, Essex, England
[2] Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, London SW7 2AZ, England
[3] Oxford Nat Prod Plc, Charlbury OX7 3EH, Oxon, England
[4] Univ London London Sch Hyg & Trop Med, Dept Infect & Trop Dis, London WC1E 7HT, England
关键词
Artemisia annua; malaria; chemometrics; H-1 NMR spectroscopy; pattern recognition; Plasmodium falciparum; biological activity; prediction;
D O I
10.1016/j.jpba.2003.12.024
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
We describe the application of H-1 NMR spectroscopy and chemometrics to the analysis of extracts of Artemisia annua. This approach allowed the discrimination of samples from different sources, and to classify them according to anti-plasmodial activity without prior knowledge of this activity. The use of partial least squares analysis allowed the prediction of actual values for anti-plasmodial activities for independent samples not used in producing the models. The models were constructed using approximately 70% of the samples, with 30% used as a validation set for which predictions were made. Models generally explained >90% of the variance, R-2 in the model, and had a predictive ability, Q(2) of >0.8. This approach was also able to correlate H-1 NMR spectra with cytotoxicity (R-2 = 0.9, Q(2) = 0.8). This work demonstrates the potential of NMR spectroscopy and chemometrics for the development of predictive models of anti-plasmodial activity. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:117 / 126
页数:10
相关论文
共 35 条
[1]   Automated mode-of-action detection by metabolic profiling [J].
Aranìbar, N ;
Singh, BK ;
Stockton, GW ;
Ott, KH .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2001, 286 (01) :150-155
[2]   Metabolomic analysis of the consequences of cadmium exposure in Silene cucubalus cell cultures via 1H NMR spectroscopy and chemometrics [J].
Bailey, NJC ;
Oven, M ;
Holmes, E ;
Nicholson, JK ;
Zenk, MH .
PHYTOCHEMISTRY, 2003, 62 (06) :851-858
[3]   Multi-component metabolic classification of commercial feverfew preparations via high-field 1H-NMR spectroscopy and chemometrics [J].
Bailey, NJC ;
Sampson, J ;
Hylands, PJ ;
Nicholson, JK ;
Holmes, E .
PLANTA MEDICA, 2002, 68 (08) :734-738
[4]  
BAILEY NJC, 2000, THESIS IMPERIAL COLL
[5]   Artemisinin and its derivatives - An important new class of antimalarial agents [J].
Balint, GA .
PHARMACOLOGY & THERAPEUTICS, 2001, 90 (2-3) :261-265
[6]   Diagnosis of inborn errors of metabolism using 1H NMR spectroscopic analysis of urine [J].
Bamforth, FJ ;
Dorian, V ;
Vallance, H ;
Wishart, DS .
JOURNAL OF INHERITED METABOLIC DISEASE, 1999, 22 (03) :297-301
[7]   Use of 13C NMR spectrometric data to produce a predictive model of estrogen receptor binding activity [J].
Beger, RD ;
Freeman, JP ;
Lay, JO ;
Wilkes, JG ;
Miller, DW .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (01) :219-224
[8]   13C NMR quantitative spectrometric data-activity relationship (QSDAR) models of steroids binding the aromatase enzyme [J].
Beger, RD ;
Buzatu, DA ;
Wilkes, JG ;
Lay, JO .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (05) :1360-1366
[9]   Models of polychlorinated dibenzodioxins, dibenzofurans, and biphenyls binding affinity to the aryl hydrocarbon receptor developed using 13C NMR data [J].
Beger, RD ;
Wilkes, JG .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (05) :1322-1329
[10]   Developing 13C NMR quantitative spectrometric data-activity relationship (QSDAR) models of steroid binding to the corticosteroid binding globulin [J].
Beger, RD ;
Wilkes, JG .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2001, 15 (07) :659-669