The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments

被引：15

作者：

Murvai, J

Vlahovicek, K

Barta, E

Cataletto, B

Pongor, S

机构：

[1] Int Ctr Genet Engn & Biotechnol, I-34012 Trieste, Italy

[2] ABC, Inst Biochem & Prot Res, H-2100 Godollo, Hungary

来源：

NUCLEIC ACIDS RESEARCH | 2000年 / 28卷 / 01期

关键词：

D O I：

10.1093/nar/28.1.260

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

SBASE 7.0 is the seventh release of the SBASE protein domain library sequences that contains 237 937 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to all major sequence databases and sequence pattern collections. The entries are clustered into over 1811 groups and are provided with two WWW-based search facilities for on-line use. SBASE 7.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it, Automated searching of SBASE with BLAST can be carried out with the WWW servers http://www,icgeb. trieste,it/sbase/ and http://sbase.abc.hu/sbase/.

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页码：260 / 262

页数：3

相关论文

共 27 条

[1] PRINTS-S: the database formerly known as PRINTS [J].

Attwood, TK ;

Croning, MDR ;

Flower, DR ;

Lewis, AP ;

Mabey, JE ;

Scordis, P ;

Selley, JN ;

Wright, W .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :225-227

[2] PRINTS prepares for the new millennium [J].

Attwood, TK ;

Flower, DR ;

Lewis, AP ;

Mabey, JE ;

Morgan, SR ;

Scordis, P ;

Selley, JN ;

Wright, W .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :220-225

[3] The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].

Bairoch, A ;

Apweiler, R .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48

[4] The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 [J].

Bairoch, A ;

Apweiler, R .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :49-54

[5] The EMBL Nucleotide Sequence Database [J].

Baker, W ;

van den Broek, A ;

Camon, E ;

Hingamp, P ;

Sterk, P ;

Stoesser, G ;

Tuli, MA .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :19-23

[6] The PIR-International Protein Sequence Database [J].

Barker, WC ;

Garavelli, JS ;

McGarvey, PB ;

Marzec, CR ;

Orcutt, BC ;

Srinivasarao, GY ;

Yeh, LSL ;

Ledley, RS ;

Mewes, HW ;

Pfeiffer, F ;

Tsugita, A ;

Wu, C .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :39-43

[7]

Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]

[8] Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins [J].

Bateman, A ;

Birney, E ;

Durbin, R ;

Eddy, SR ;

Finn, RD ;

Sonnhammer, ELL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :260-262

[9] GenBank [J].

Benson, DA ;

Boguski, MS ;

Lipman, DJ ;

Ostell, J ;

Ouellette, BFF ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :12-17

[10] GenBank [J].

Benson, DA ;

Karsch-Mizrachi, I ;

Lipman, DJ ;

Ostell, J ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :15-18