Relaxed Selection Limits Lifespan by Increasing Mutation Load

被引:89
作者
Cui, Rongfeng [1 ]
Medeiros, Tania [1 ]
Willemsen, David [1 ]
Iasi, Leonardo N. M. [1 ]
Collier, Glen E. [2 ]
Graef, Martin [1 ,4 ]
Reichard, Martin [3 ]
Valenzano, Dario Riccardo [1 ,4 ]
机构
[1] Max Planck Inst Biol Ageing, D-50931 Cologne, Germany
[2] Univ Tulsa, Dept Biol Sci, Tulsa, OK 74104 USA
[3] Czech Acad Sci, Inst Vertebrate Biol, Brno 60365, Czech Republic
[4] Univ Cologne, CECAD, D-50931 Cologne, Germany
关键词
DNA-POLYMERASE GAMMA; MULTIPLE SEQUENCE ALIGNMENT; EVOLUTIONARY ADAPTATION; PHYLOGENETIC ANALYSIS; POPULATION HISTORY; PROVIDES INSIGHTS; READ ALIGNMENT; GENOME; PROTEIN; TOOL;
D O I
10.1016/j.cell.2019.06.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
To uncover the selective forces shaping life-history trait evolution across species, we investigate the genomic basis underlying adaptations to seasonal habitat desiccation in African killifishes, identifying the genetic variants associated with positive and relaxed purifying selection in 45 killifish species and 231 wild individuals distributed throughout sub-Saharan Africa. In annual species, genetic drift led to the expansion of nuclear and mitochondrial genomes and caused the accumulation of deleterious genetic variants in key life-history modulating genes such as mtor, insr, ampk, foxo3, and polg. Relaxation of purifying selection is also significantly associated with mitochondrial function and aging in human populations. We find that relaxation of purifying selection prominently shapes genomes and is a prime candidate force molding the evolution of lifespan and the distribution of genetic variants associated with late-onset diseases in different species.
引用
收藏
页码:385 / +
页数:35
相关论文
共 141 条
[31]
CAFE: a computational tool for the study of gene family evolution [J].
De Bie, T ;
Cristianini, N ;
Demuth, JP ;
Hahn, MW .
BIOINFORMATICS, 2006, 22 (10) :1269-1271
[32]
Chimpanzee genomic diversity reveals ancient admixture with bonobos [J].
de Manuel, Marc ;
Kuhlwilm, Martin ;
Frandsen, Peter ;
Sousa, Vitor C. ;
Desai, Tariq ;
Prado-Martinez, Javier ;
Hernandez-Rodriguez, Jessica ;
Dupanloup, Isabelle ;
Lao, Oscar ;
Hallast, Pille ;
Schmidt, Joshua M. ;
Maria Heredia-Genestar, Jose ;
Benazzo, Andrea ;
Barbujani, Guido ;
Peter, Benjamin M. ;
Kuderna, Lukas F. K. ;
Casals, Ferran ;
Angedakin, Samuel ;
Arandjelovic, Mimi ;
Boesch, Christophe ;
Kuehl, Hjalmar ;
Vigilant, Linda ;
Langergraber, Kevin ;
Novembre, John ;
Gut, Marta ;
Gut, Ivo ;
Navarro, Arcadi ;
Carlsen, Frands ;
Andres, Aida M. ;
Siegismund, Hans. R. ;
Scally, Aylwyn ;
Excoffier, Laurent ;
Tyler-Smith, Chris ;
Castellano, Sergi ;
Xue, Yali ;
Hvilsom, Christina ;
Marques-Bonet, Tomas .
SCIENCE, 2016, 354 (6311) :477-481
[33]
NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].
Dierckxsens, Nicolas ;
Mardulyn, Patrick ;
Smits, Guillaume .
NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
[34]
STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[35]
Oxidative DNA damage causes mitochondrial genomic instability in Saccharomyces cerevisiae [J].
Doudican, NA ;
Song, BW ;
Shadel, GS ;
Doetsch, PW .
MOLECULAR AND CELLULAR BIOLOGY, 2005, 25 (12) :5196-5204
[36]
A probabilistic model of local sequence alignment that simplifies statistical significance estimation [J].
Eddy, Sean R. .
PLOS COMPUTATIONAL BIOLOGY, 2008, 4 (05)
[37]
MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[38]
An efficient algorithm for large-scale detection of protein families [J].
Enright, AJ ;
Van Dongen, S ;
Ouzounis, CA .
NUCLEIC ACIDS RESEARCH, 2002, 30 (07) :1575-1584
[39]
The distribution of fitness effects of new mutations [J].
Eyre-Walker, Adam ;
Keightley, Peter D. .
NATURE REVIEWS GENETICS, 2007, 8 (08) :610-618
[40]
Mapping 136 pathogenic mutations into functional modules in human DNA polymerase γ establishes predictive genotype-phenotype correlations for the complete spectrum of POLG syndromes [J].
Farnum, Gregory A. ;
Nurminen, Anssi ;
Kaguni, Laurie S. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 2014, 1837 (07) :1113-1121