共 107 条
Using protein folding rates to test protein folding theories
被引:56
作者:

Gillespie, B
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Plaxco, KW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
机构:
[1] Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
[2] Univ Calif Santa Barbara, Interdept Program Biomol Sci & Engn, Santa Barbara, CA 93106 USA
关键词:
simulation;
nucleation;
topomer search;
D O I:
10.1146/annurev.biochem.73.011303.073904
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The fastest simple, kinetically two-state protein folds a million times more rapidly than the slowest. Here we review many recent theories of protein folding kinetics in terms of their ability to qualitatively rationalize, if not quantitatively predict, this fundamental experimental observation.
引用
收藏
页码:837 / 859
页数:23
相关论文
共 107 条
[21]
Transition-state structure as a unifying basis in protein-folding mechanisms: Contact order, chain topology, stability, and the extended nucleus mechanism
[J].
Fersht, AR
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2000, 97 (04)
:1525-1529

Fersht, AR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Chem Lab, Cambridge CB2 1EW, England
[22]
OPTIMIZATION OF RATES OF PROTEIN-FOLDING - THE NUCLEATION-CONDENSATION MECHANISM AND ITS IMPLICATIONS
[J].
FERSHT, AR
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1995, 92 (24)
:10869-10873

FERSHT, AR
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV CAMBRIDGE,DEPT CHEM,CAMBRIDGE CTR PROT ENGN,CAMBRIDGE CB2 1EW,ENGLAND UNIV CAMBRIDGE,DEPT CHEM,CAMBRIDGE CTR PROT ENGN,CAMBRIDGE CB2 1EW,ENGLAND
[23]
Nucleation mechanisms in protein folding
[J].
Fersht, AR
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
1997, 7 (01)
:3-9

Fersht, AR
论文数: 0 引用数: 0
h-index: 0
机构: Cambridge Univ. Chemical Laboratory, Lensfield Road, CB2 1EW, Cambridge
[24]
A thermodynamic analysis of a family of small globular proteins: SH3 domains
[J].
Filimonov, VV
;
Azuaga, AI
;
Viguera, AR
;
Serrano, L
;
Mateo, PL
.
BIOPHYSICAL CHEMISTRY,
1999, 77 (2-3)
:195-208

Filimonov, VV
论文数: 0 引用数: 0
h-index: 0
机构: Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain

Azuaga, AI
论文数: 0 引用数: 0
h-index: 0
机构: Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain

Viguera, AR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain

Serrano, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain

Mateo, PL
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain Univ Granada, Fac Sci, Dept Phys Chem, E-18071 Granada, Spain
[25]
TRUNCATED STAPHYLOCOCCAL NUCLEASE IS COMPACT BUT DISORDERED
[J].
FLANAGAN, JM
;
KATAOKA, M
;
SHORTLE, D
;
ENGELMAN, DM
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1992, 89 (02)
:748-752

FLANAGAN, JM
论文数: 0 引用数: 0
h-index: 0
机构: JOHNS HOPKINS UNIV,DEPT BIOL CHEM,BALTIMORE,MD 21205

KATAOKA, M
论文数: 0 引用数: 0
h-index: 0
机构: JOHNS HOPKINS UNIV,DEPT BIOL CHEM,BALTIMORE,MD 21205

SHORTLE, D
论文数: 0 引用数: 0
h-index: 0
机构: JOHNS HOPKINS UNIV,DEPT BIOL CHEM,BALTIMORE,MD 21205

ENGELMAN, DM
论文数: 0 引用数: 0
h-index: 0
机构: JOHNS HOPKINS UNIV,DEPT BIOL CHEM,BALTIMORE,MD 21205
[26]
Nonglassy kinetics in the folding of a simple single-domain protein
[J].
Gillespie, B
;
Plaxco, KW
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2000, 97 (22)
:12014-12019

Gillespie, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Plaxco, KW
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
[27]
NMR and temperature-jump measurements of de novo designed proteins demonstrate rapid folding in the absence of explicit selection for kinetics
[J].
Gillespie, B
;
Vu, DM
;
Shah, PS
;
Marshall, SA
;
Dyer, RB
;
Mayo, SL
;
Plaxco, KW
.
JOURNAL OF MOLECULAR BIOLOGY,
2003, 330 (04)
:813-819

Gillespie, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Vu, DM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Shah, PS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Marshall, SA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Dyer, RB
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Mayo, SL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Plaxco, KW
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
[28]
Local secondary structure content predicts folding rates for simple, two-state proteins
[J].
Gong, HP
;
Isom, DG
;
Srinivasan, R
;
Rose, GD
.
JOURNAL OF MOLECULAR BIOLOGY,
2003, 327 (05)
:1149-1154

Gong, HP
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA

Isom, DG
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA

Srinivasan, R
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA

Rose, GD
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA Johns Hopkins Univ, Jenkins Dept Biophys, Baltimore, MD 21218 USA
[29]
SEARCHING FOR FOLDABLE PROTEIN STRUCTURES USING OPTIMIZED ENERGY FUNCTIONS
[J].
GOVINDARAJAN, S
;
GOLDSTEIN, RA
.
BIOPOLYMERS,
1995, 36 (01)
:43-51

GOVINDARAJAN, S
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109 UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109

GOLDSTEIN, RA
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109 UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109
[30]
Mechanisms of protein folding
[J].
Grantcharova, V
;
Alm, EJ
;
Baker, D
;
Horwich, AL
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2001, 11 (01)
:70-82

Grantcharova, V
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Alm, EJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Baker, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Biochem, Seattle, WA 98195 USA

Horwich, AL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Biochem, Seattle, WA 98195 USA