The BioGRID interaction database: 2017 update

被引:691
作者
Chatr-aryamontri, Andrew [1 ]
Oughtred, Rose [2 ]
Boucher, Lorrie [3 ]
Rust, Jennifer [2 ]
Chang, Christie [2 ]
Kolas, Nadine K. [3 ]
O'Donnell, Lara [3 ]
Oster, Sara [3 ]
Theesfeld, Chandra [2 ]
Sellam, Adnane [4 ]
Stark, Chris [3 ]
Breitkreutz, Bobby-Joe [3 ]
Dolinski, Kara [2 ]
Tyers, Mike [1 ,3 ]
机构
[1] Univ Montreal, Inst Res Immunol & Canc, Montreal, PQ H3T 1J4, Canada
[2] Princeton Univ, Lewis Sigler Inst Integrat Genom, Princeton, NJ 08544 USA
[3] Mt Sinai Hosp, Lunenfeld Tanenbaum Res Inst, Toronto, ON M5G 1X5, Canada
[4] CHUL, Quebec City, PQ G1V 4G2, Canada
基金
美国国家卫生研究院; 英国生物技术与生命科学研究理事会;
关键词
PROTEIN-PROTEIN INTERACTIONS; INTERACTION NETWORKS; RESOURCE; INFORMATION; IDENTIFICATION; EXPLORATION; LANDSCAPE; CURATION; DISEASE; SYSTEM;
D O I
10.1093/nar/gkw1102
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Biological General Repository for Interaction Datasets (BioGRID: https://thebiogrid.org) is an open access database dedicated to the annotation and archival of protein, genetic and chemical interactions for all major model organism species and humans. As of September 2016 (build 3.4.140), the BioGRID contains 1 072 173 genetic and protein interactions, and 38 559 post-translational modifications, as manually annotated from 48 114 publications. This dataset represents interaction records for 66 model organisms and represents a 30% increase compared to the previous 2015 BioGRID update. BioGRID curates the biomedical literature for major model organism species, including humans, with a recent emphasis on central biological processes and specific human diseases. To facilitate network-based approaches to drug discovery, BioGRID now incorporates 27 501 chemical-protein interactions for human drug targets, as drawn from the DrugBank database. A new dynamic interaction network viewer allows the easy navigation and filtering of all genetic and protein interaction data, as well as for bioactive compounds and their established targets. BioGRID data are directly downloadable without restriction in a variety of standardized formats and are freely distributed through partner model organism databases and meta-databases.
引用
收藏
页码:D369 / D379
页数:11
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