Quantifying Additive Interactions of the Osmolyte Proline with Individual Functional Groups of Proteins: Comparisons with Urea and Glycine Betaine, Interpretation of m-Values

被引:60
作者
Diehl, Roger C. [1 ]
Guinn, Emily J. [2 ]
Capp, Michael W. [1 ]
Tsodikov, Oleg V. [3 ]
Record, M. Thomas, Jr. [1 ,2 ]
机构
[1] Univ Wisconsin, Dept Biochem, Madison, WI 53706 USA
[2] Univ Wisconsin, Dept Chem, Madison, WI 53706 USA
[3] Univ Kentucky, Dept Pharmaceut Sci, Lexington, KY 40538 USA
关键词
ACCESSIBLE SURFACE-AREAS; COLI RNA-POLYMERASE; ESCHERICHIA-COLI; PREFERENTIAL INTERACTIONS; CONFORMATIONAL-CHANGES; MODEL-COMPOUND; OSMOTIC-STRESS; WATER-STRESS; ACTIVE-SITE; BULK WATER;
D O I
10.1021/bi400683y
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
To quantify interactions of the osmolyte L-proline with protein functional groups and predict their effects on protein processes, we use vapor pressure osmometry to determine chemical potential derivatives d mu(2)/dm(3) = mu(23), quantifying the preferential interactions of proline (component 3) with 21 solutes (component 2) selected to display different combinations of aliphatic or aromatic C, amide, carboxylate, phosphate or hydroxyl O, and amide or cationic N surface. Solubility data yield mu(23) values for four less-soluble solutes. Values of mu(23) are dissected using an ASA-based analysis to test the hypothesis of additivity and obtain alpha-values (proline interaction potentials) for these eight surface types and three inorganic ions. Values of mu(23) predicted from these alpha-values agree with the experiment, demonstrating additivity. Molecular interpretation of alpha-values using the solute partitioning model yields partition coefficients (K-p) quantifying the local accumulation or exclusion of proline in the hydration water of each functional group. Interactions of proline with native protein surfaces and effects of proline on protein unfolding are predicted from alpha-values and ASA information and compared with experimental data, with results for glycine betaine and urea, and with predictions from transfer free energy analysis. We conclude that proline stabilizes proteins because of its unfavorable interactions with (exclusion from) amide oxygens and aliphatic hydrocarbon surfaces exposed in unfolding and that proline is an effective in vivo osmolyte because of the osmolality increase resulting from its unfavorable interactions with anionic (carboxylate and phosphate) and amide oxygens and aliphatic hydrocarbon groups on the surface of cytoplasmic proteins and nucleic acids.
引用
收藏
页码:5997 / 6010
页数:14
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