DOMINO: a database of domain-peptide interactions

被引:60
作者
Ceol, Arnaud [1 ]
Chatr-aryamontri, Andrew [1 ]
Santonico, Elena [1 ]
Sacco, Roberto [1 ]
Castagnoli, Luisa [1 ]
Cesareni, Gianni [1 ]
机构
[1] Univ Roma Tor Vergata, Dept Biol, I-00133 Rome, Italy
关键词
D O I
10.1093/nar/gkl961
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Many protein interactions are mediated by small protein modules binding to short linear peptides. DOMINO (http://mint.bio.uniroma2.it/domino/) is an open-access database comprising more than 3900 annotated experiments describing interactions mediated by protein-interaction domains. DOMINO can be searched with a versatile search tool and the interaction networks can be visualized with a convenient graphic display applet that explicitly identifies the domains/sites involved in the interactions.
引用
收藏
页码:D557 / D560
页数:4
相关论文
共 16 条
  • [1] The Biomolecular Interaction Network Database and related tools 2005 update
    Alfarano, C
    Andrade, CE
    Anthony, K
    Bahroos, N
    Bajec, M
    Bantoft, K
    Betel, D
    Bobechko, B
    Boutilier, K
    Burgess, E
    Buzadzija, K
    Cavero, R
    D'Abreo, C
    Donaldson, I
    Dorairajoo, D
    Dumontier, MJ
    Dumontier, MR
    Earles, V
    Farrall, R
    Feldman, H
    Garderman, E
    Gong, Y
    Gonzaga, R
    Grytsan, V
    Gryz, E
    Gu, V
    Haldorsen, E
    Halupa, A
    Haw, R
    Hrvojic, A
    Hurrell, L
    Isserlin, R
    Jack, F
    Juma, F
    Khan, A
    Kon, T
    Konopinsky, S
    Le, V
    Lee, E
    Ling, S
    Magidin, M
    Moniakis, J
    Montojo, J
    Moore, S
    Muskat, B
    Ng, I
    Paraiso, JP
    Parker, B
    Pintilie, G
    Pirone, R
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D418 - D424
  • [2] PDZBase: a protein-protein interaction database for PDZ-domains
    Beuming, T
    Skrabanek, L
    Niv, MY
    Mukherjee, P
    Weinstein, H
    [J]. BIOINFORMATICS, 2005, 21 (06) : 827 - 828
  • [3] Cesareni G., 2004, Modular Protein Domains
  • [4] iPfam:: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Finn, RD
    Marshall, M
    Bateman, A
    [J]. BIOINFORMATICS, 2005, 21 (03) : 410 - 412
  • [5] MPact:: the MIPS protein interaction resource on yeast
    Gueldener, Ulrich
    Muensterkoetter, Martin
    Oesterheld, Matthias
    Pagel, Philipp
    Ruepp, Andreas
    Mewes, Hans-Werner
    Stuempflen, Volker
    [J]. NUCLEIC ACIDS RESEARCH, 2006, 34 : D436 - D441
  • [6] IntAct: an open source molecular interaction database
    Hermjakob, H
    Montecchi-Palazzi, L
    Lewington, C
    Mudali, S
    Kerrien, S
    Orchard, S
    Vingron, M
    Roechert, B
    Roepstorff, P
    Valencia, A
    Margalit, H
    Armstrong, J
    Bairoch, A
    Cesareni, G
    Sherman, D
    Apweller, R
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D452 - D455
  • [7] The HUPOPSI's Molecular Interaction format - a community standard for the representation of protein interaction data
    Hermjakob, H
    Montecchi-Palazzi, L
    Bader, G
    Wojcik, R
    Salwinski, L
    Ceol, A
    Moore, S
    Orchard, S
    Sarkans, U
    von Mering, C
    Roechert, B
    Poux, S
    Jung, E
    Mersch, H
    Kersey, P
    Lappe, M
    Li, YX
    Zeng, R
    Rana, D
    Nikolski, M
    Husi, H
    Brun, C
    Shanker, K
    Grant, SGN
    Sander, C
    Bork, P
    Zhu, WM
    Pandey, A
    Brazma, A
    Jacq, B
    Vidal, M
    Sherman, D
    Legrain, P
    Cesareni, G
    Xenarios, L
    Eisenberg, D
    Steipe, B
    Hogue, C
    Apweiler, R
    [J]. NATURE BIOTECHNOLOGY, 2004, 22 (02) : 177 - 183
  • [8] InterDom: a database of putative interacting protein domains for validating predicted protein interaction and complexes
    Ng, SK
    Zhang, Z
    Tan, SH
    Lin, K
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 251 - 254
  • [9] The DIMA web resource - exploring the protein domain network
    Pagel, P
    Oesterheld, M
    Frishman, D
    [J]. BIOINFORMATICS, 2006, 22 (08) : 997 - 998
  • [10] Assembly of cell regulatory systems through protein interaction domains
    Pawson, T
    Nash, P
    [J]. SCIENCE, 2003, 300 (5618) : 445 - 452