Reprogramming the Methylome: Erasing Memory and Creating Diversity

被引:252
作者
Lee, Heather J. [1 ,2 ]
Hore, Timothy A. [1 ]
Reik, Wolf [1 ,2 ,3 ]
机构
[1] Babraham Inst, Epigenet Programme, Cambridge CB22 3AT, England
[2] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, England
[3] Univ Cambridge, Ctr Trophoblast Res, Cambridge CB2 3EG, England
基金
英国生物技术与生命科学研究理事会; 英国惠康基金;
关键词
EMBRYONIC STEM-CELLS; PRIMORDIAL GERM-CELLS; DNA METHYLATION; GROUND-STATE; NAIVE PLURIPOTENCY; HISTONE METHYLATION; SYSTEMS BIOLOGY; DEMETHYLATION; GENOME; DYNAMICS;
D O I
10.1016/j.stem.2014.05.008
中图分类号
Q813 [细胞工程];
学科分类号
摘要
The inheritance of epigenetic marks, in particular DNA methylation, provides a molecular memory that ensures faithful commitment to transcriptional programs during mammalian development. Epigenetic reprogramming results in global hypomethylation of the genome together with a profound loss of memory, which underlies naive pluripotency. Such global reprogramming occurs in primordial germ cells, early embryos, and embryonic stem cells where reciprocal molecular links connect the methylation machinery to pluripotency. Priming for differentiation is initiated upon exit from pluripotency, and we propose that epigenetic mechanisms create diversity of transcriptional states, which help with symmetry breaking during cell fate decisions and lineage commitment.
引用
收藏
页码:710 / 719
页数:10
相关论文
共 103 条
[71]   Epigenetic factors influencing resistance to nuclear reprogramming [J].
Pasque, Vincent ;
Jullien, Jerome ;
Miyamoto, Kei ;
Halley-Stott, Richard P. ;
Gurdon, J. B. .
TRENDS IN GENETICS, 2011, 27 (12) :516-525
[72]   Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos [J].
Peaston, AE ;
Evsikov, AV ;
Graber, JH ;
de Vries, WN ;
Holbrook, AE ;
Solter, D ;
Knowles, BB .
DEVELOPMENTAL CELL, 2004, 7 (04) :597-606
[73]   Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency [J].
Popp, Christian ;
Dean, Wendy ;
Feng, Suhua ;
Cokus, Shawn J. ;
Andrews, Simon ;
Pellegrini, Matteo ;
Jacobsen, Steven E. ;
Reik, Wolf .
NATURE, 2010, 463 (7284) :1101-U126
[74]   In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions [J].
Quenneville, Simon ;
Verde, Gaetano ;
Corsinotti, Andrea ;
Kapopoulou, Adamandia ;
Jakobsson, Johan ;
Offner, Sandra ;
Baglivo, Ilaria ;
Pedone, Paolo V. ;
Grimaldi, Giovanna ;
Riccio, Andrea ;
Trono, Didier .
MOLECULAR CELL, 2011, 44 (03) :361-372
[75]   An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data [J].
Ramskold, Daniel ;
Wang, Eric T. ;
Burge, Christopher B. ;
Sandberg, Rickard .
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (12)
[76]   Epigenetic reprogramming in mammalian development [J].
Reik, W ;
Dean, W ;
Walter, J .
SCIENCE, 2001, 293 (5532) :1089-1093
[77]   Stability and flexibility of epigenetic gene regulation in mammalian development [J].
Reik, Wolf .
NATURE, 2007, 447 (7143) :425-432
[78]   Active demethylation in mouse zygotes involves cytosine deamination and base excision repair [J].
Santos, Fatima ;
Peat, Julian ;
Burgess, Heather ;
Rada, Cristina ;
Reik, Wolf ;
Dean, Wendy .
EPIGENETICS & CHROMATIN, 2013, 6
[79]   Epigenetic events in mammalian germ-cell development: reprogramming and beyond [J].
Sasaki, Hiroyuki ;
Matsui, Yasuhisa .
NATURE REVIEWS GENETICS, 2008, 9 (02) :129-140
[80]   Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity [J].
Schmidl, Christian ;
Klug, Maja ;
Boeld, Tina J. ;
Andreesen, Reinhard ;
Hoffmann, Petra ;
Edinger, Matthias ;
Rehli, Michael .
GENOME RESEARCH, 2009, 19 (07) :1165-1174