From protein structure to function

被引:178
作者
Orengo, CA [1 ]
Todd, AE [1 ]
Thornton, JM [1 ]
机构
[1] UCL, Dept Biochem, Biomol Struct & Modelling Unit, London WC1E 6BT, England
关键词
D O I
10.1016/S0959-440X(99)80051-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Several databases of protein structural families now exist organised according to both evolutionary relationships and common folding arrangements. Although these lag behind sequence databases in size, the prospect of structural genomics initiatives means that they may soon include representatives of many of the sequence families. To some extent, functional information can be derived from structural similarity. For some structural families, their function is highly conserved, whereas, for others, it can only be inherited or derived on the basis of additional information (e.g. sequence patterns, common residue clusters and characteristic surface properties).
引用
收藏
页码:374 / 382
页数:9
相关论文
共 70 条
[11]   Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases [J].
Fetrow, JS ;
Skolnick, J .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 281 (05) :949-968
[12]   Novel disulfide oxidoreductase in search of a function [J].
Freedman, RB .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (07) :531-532
[13]   Evolution of an enzyme active site: The structure of a new crystal form of muconate lactonizing enzyme compared with mandelate racemase and enolase [J].
Hasson, MS ;
Schlichting, I ;
Moulai, J ;
Taylor, K ;
Barrett, W ;
Kenyon, GL ;
Babbitt, PC ;
Gerlt, JA ;
Petsko, GA ;
Ringe, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (18) :10396-10401
[14]   The crystal structure of benzoylformate decarboxylase at 1.6 Å resolution:: Diversity of catalytic residues in thiamin diphosphate-dependent enzymes [J].
Hasson, MS ;
Muscate, A ;
McLeish, MJ ;
Polovnikova, LS ;
Gerlt, JA ;
Kenyon, GL ;
Petsko, GA ;
Ringe, D .
BIOCHEMISTRY, 1998, 37 (28) :9918-9930
[15]  
Hendlich M, 1996, ABSTR PAP AM CHEM S, V211, P49
[16]   The PROSITE database, its status in 1999 [J].
Hofmann, K ;
Bucher, P ;
Falquet, L ;
Bairoch, A .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :215-219
[17]   A dynamic look at structures: WWW-Entrez and the Molecular Modeling Database [J].
Hogue, CWV ;
Ohkawa, H ;
Bryant, SH .
TRENDS IN BIOCHEMICAL SCIENCES, 1996, 21 (06) :226-229
[18]   New structure - Novel fold? [J].
Holm, L ;
Sander, C .
STRUCTURE, 1997, 5 (02) :165-171
[19]   Mapping the protein universe [J].
Holm, L ;
Sander, C .
SCIENCE, 1996, 273 (5275) :595-602
[20]   Enzyme HIT [J].
Holm, L ;
Sander, C .
TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (04) :116-117