Applications of DL_POLY and DL_MULTI to organic molecular crystals

被引:27
作者
Price, S. L. [1 ]
Hamad, S.
Torrisi, A.
Karamertzanis, P. G.
Leslie, M.
Catlow, C. R. A.
机构
[1] UCL, Dept Chem, 20 Gordon St, London WC1H 0AJ, England
[2] UCL Royal Inst Great Britain, London W1S 4BS, England
[3] CCLRC, Daresbury Lab, Warrington WA4 4AD, Cheshire, England
基金
英国工程与自然科学研究理事会;
关键词
organic solid state; polymorphism; distributed multipoles; molecular dynamics simulations;
D O I
10.1080/08927020600880810
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular dynamics (MD) simulations are capable of giving considerable insight into the polymorphism of organic molecules, a problem of major concern to the pharmaceutical and other speciality chemicals industries. We illustrate some of the challenges involved in small organic systems, which have complex solid-state phase behaviour, including characterizing rotationally disordered phases, modelling polymorphs with very different hydrogen bonding motifs and explaining the solvent dependence of a polymorphic system. Simulating the dynamics within the organic solid state can be very demanding of the model for the weak forces between the molecules. This has led to the development of DL_MULTI so that a distributed multipole electrostatic model can be used to describe the orientation dependence of hydrogen bonding and pi-pi stacking more realistically. Once a simulation is correctly reproducing the known crystal structures, there are also considerable system-specific challenges in extracting novel insights from the MD simulations.
引用
收藏
页码:985 / 997
页数:13
相关论文
共 83 条
[71]   Impact of molecular speciation on crystal nucleation in polymorphic systems:: The conundrum of γ glycine and molecular 'self poisoning' [J].
Towler, CS ;
Davey, RJ ;
Lancaster, RW ;
Price, CJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (41) :13347-13353
[72]   An approach to developing a force field for molecular simulation of martensitic phase transitions between phases with subtle differences in energy and structure [J].
Tuble, SC ;
Anwar, J ;
Gale, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (01) :396-405
[73]   Comment on "Crystal structure prediction by global optimization as a tool for evaluating potentials: Role of the dipole moment correction term in successful predictions" [J].
van Eijck, BP ;
Kroon, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (33) :8089-8089
[74]   Molecular conformations and relative stabilities can be as demanding of the electronic structure method as intermolecular calculations [J].
van Mourik, T ;
Karamertzanis, PG ;
Price, SL .
JOURNAL OF PHYSICAL CHEMISTRY A, 2006, 110 (01) :8-12
[75]   Coulomb energy of polar crystals [J].
vanEijck, BP ;
Kroon, J .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (06) :1096-1100
[76]   The predictably elusive form II of aspirin [J].
Vishweshwar, P ;
McMahon, JA ;
Oliveira, M ;
Peterson, ML ;
Zaworotko, MJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (48) :16802-16803
[77]   Reply to "Comment on 'Crystal structure prediction by global optimization as a tool for evaluating potentials: Role of the dipole moment correction term in successful predictions"' by B. P. van Eijck and J. Kroon [J].
Wedemeyer, WJ ;
Arnautova, YA ;
Pillardy, J ;
Wawak, RJ ;
Czaplewski, C ;
Scheraga, HA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (33) :8090-8092
[78]   Solvent effect on crystal polymorphism:: Why addition of methanol or ethanol to aqueous solutions induces the precipitation of the least stable β form of glycine [J].
Weissbuch, I ;
Torbeev, VY ;
Leiserowitz, L ;
Lahav, M .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2005, 44 (21) :3226-3229
[79]   NONBONDED POTENTIALS FOR AZAHYDROCARBONS - THE IMPORTANCE OF THE COULOMBIC INTERACTION [J].
WILLIAMS, DE ;
COX, SR .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1984, 40 (AUG) :404-417
[80]   THE RELAXATION OF MOLECULAR-CRYSTAL STRUCTURES USING A DISTRIBUTED MULTIPOLE ELECTROSTATIC MODEL [J].
WILLOCK, DJ ;
PRICE, SL ;
LESLIE, M ;
CATLOW, CRA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1995, 16 (05) :628-647