A partition-ligation-combination-subdivision EM algorithm for haplotype inference with multiallelic markers: update of the SHEsis (http://analysis.bio-x.cn)

被引：743

作者：

Li, Zhiqiang ^{[1
,2
,3
]}

Zhang, Zhao ^{[2
,3
]}

He, Zangdong ^{[1
,2
,3
]}

Tang, Wei ^{[2
,3
]}

Li, Tao ^{[1
,2
,3
]}

Zeng, Zhen ^{[1
,2
,3
]}

He, Lin ^{[2
,3
,4
]}

Shi, Yongyong ^{[1
,2
,3
]}

机构：

[1] Shanghai Jiao Tong Univ, Affiliated Hosp, Bio X Ctr, Changning Mental Hlth Ctr, Shanghai 200042, Peoples R China

[2] Shanghai Jiao Tong Univ, Bio X Ctr, Shanghai 200030, Peoples R China

[3] Chinese Acad Sci, Shanghai Inst Biol Sci, Inst Nutr Sci, Shanghai 200031, Peoples R China

[4] Fudan Univ, Inst Biomed Sci, Shanghai 200032, Peoples R China

来源：

CELL RESEARCH | 2009年 / 19卷 / 04期

关键词：

ASSOCIATION; POPULATION; SAMPLES;

D O I：

10.1038/cr.2009.33

中图分类号：

Q2 [细胞生物学];

学科分类号：

071013 [干细胞生物学];

摘要：

[No abstract available]

引用

页码：519 / 523

页数：5

共 9 条

[1]

CLARK AG, 1990, MOL BIOL EVOL, V7, P111

[2]

EXCOFFIER L, 1995, MOL BIOL EVOL, V12, P921

[3]

Generating samples under a Wright-Fisher neutral model of genetic variation [J].

Hudson, RR .

BIOINFORMATICS, 2002, 18 (02) :337-338

[4]

Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms [J].

Niu, TH ;

Qin, ZHS ;

Xu, XP ;

Liu, JS .

AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 70 (01) :157-169

[5]

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms [J].

Qin, ZHS ;

Niu, TH ;

Liu, JS .

AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 71 (05) :1242-1247

[6]

SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci [J].

Shi, YY ;

He, L .

CELL RESEARCH, 2005, 15 (02) :97-98

[7]

A new statistical method for haplotype reconstruction from population data [J].

Stephens, M ;

Smith, NJ ;

Donnelly, P .

AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 68 (04) :978-989

[8]

A new algorithm for haplotype-based association analysis: the stochastic-EM algorithm [J].

Tregouet, DA ;

Escolano, S ;

Tiret, L ;

Mallet, A ;

Golmard, JL .

ANNALS OF HUMAN GENETICS, 2004, 68 :165-177

[9]

Optimal Step Length EM Algorithm (OSLEM) for the estimation of haplotype frequency and its application in lipoprotein lipase genotyping [J].

Zhang, PS ;

Sheng, HT ;

Morabia, A ;

Gilliam, TC .

BMC BIOINFORMATICS, 2003, 4 (1)

← 1 →