A comprehensive pathway map of epidermal growth factor receptor signaling

被引:853
作者
Oda, Kanae
Matsuoka, Yukiko
Funahashi, Akira
Kitano, Hiroaki
机构
[1] Syst Biol Inst, Tokyo, Japan
[2] Keio Univ, Dept Fundamental Sci & Technol, Tokyo, Japan
[3] Japan Sci & Technol Agcy, ERATO, SORST, Kitano Symbiot Syst Project, Tokyo, Japan
[4] Sony Comp Sci Labs Inc, Tokyo, Japan
关键词
bow-tie structure; comprehensive pathway map; epidermal growth factor receptor; graphical notation; Systems Biology Markup Language (SBML);
D O I
10.1038/msb4100014
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The epidermal growth factor receptor (EGFR) signaling pathway is one of the most important pathways that regulate growth, survival, proliferation, and differentiation in mammalian cells. Reflecting this importance, it is one of the best-investigated signaling systems, both experimentally and computationally, and several computational models have been developed for dynamic analysis. A map of molecular interactions of the EGFR signaling system is a valuable resource for research in this area. In this paper, we present a comprehensive pathway map of EGFR signaling and other related pathways. The map reveals that the overall architecture of the pathway is a bow-tie (or hourglass) structure with several feedback loops. The map is created using CellDesigner software that enables us to graphically represent interactions using a well-defined and consistent graphical notation, and to store it in Systems Biology Markup Language (SBML).
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页数:17
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