The Expanding World of Methylotrophic Metabolism

被引：316

作者：

Chistoserdova, Ludmila ^{[1
]}

Kalyuzhnaya, Marina G. ^{[2
]}

Lidstrom, Mary E. ^{[1
,2
]}

机构：

[1] Univ Washington, Dept Chem Engn, Seattle, WA 98195 USA

[2] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA

来源：

ANNUAL REVIEW OF MICROBIOLOGY | 2009年 / 63卷

关键词：

methylotrophy; biochemistry; physiology; genomics; ecology; METHYLOBACTERIUM-EXTORQUENS AM1; TERT-BUTYL ETHER; METHYLMALONYL-COA MUTASE; COMMUNITY-LEVEL ANALYSIS; ACETIC-ACID BACTERIUM; METHANE OXIDATION; SP-NOV; GEN; NOV; GENOME SEQUENCE; ENVIRONMENTAL DETECTION;

D O I：

10.1146/annurev.micro.091208.073600

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

In the past few years, the field of methylotrophy has undergone a significant transformation in terms of discovery of novel types of methylotrophs, novel modes of methylotrophy, and novel metabolic pathways. This time has also been marked by the resolution of long-standing questions regarding methylotrophy and the challenge of long-standing dogmas. This chapter is not intended to provide a comprehensive review of metabolism of methylotrophic bacteria. Instead we focus on significant recent discoveries that are both refining and transforming the current understanding of methylotrophy as a metabolic phenomenon. We also review new directions in methylotroph ecology that improve our understanding of the role of methylotrophy in global biogeochemical processes, along with an outlook for the future challenges in the field.

引用

页码：477 / 499

页数：23

共 116 条

[81] Bacterial populations active in metabolism of C1 compounds in the sediment of Lake Washington, a freshwater lake [J].

Nercessian, O ;

Noyes, E ;

Kalyuzhnaya, MG ;

Lidstrom, ME ;

Chistoserdova, L .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (11) :6885-6899

[82] Substrate-Specific Clades of Active Marine Methylotrophs Associated with a Phytoplankton Bloom in a Temperate Coastal Environment [J].

Neufeld, Josh D. ;

Boden, Rich ;

Moussard, Helene ;

Schaefer, Hendrik ;

Murrell, J. Colin .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (23) :7321-7328

[83] Methodological considerations for the use of stable isotope probing in microbial ecology [J].

Neufeld, Josh D. ;

Dumont, Marc G. ;

Vohra, Jyotsna ;

Murrell, J. Colin .

MICROBIAL ECOLOGY, 2007, 53 (03) :435-442

[84] Who eats what, where and when? Isotope-labelling experiments are coming of age [J].

Neufeld, Josh D. ;

Wagner, Michael ;

Murrell, J. Colin .

ISME JOURNAL, 2007, 1 (02) :103-110

[85] Whither or wither geomicrobiology in the era of 'community metagenomics' [J].

Oremland, RS ;

Capone, DG ;

Stolz, JF ;

Fuhrman, JA .

NATURE REVIEWS MICROBIOLOGY, 2005, 3 (07) :572-578

[86] Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics [J].

Peyraud, Remi ;

Kiefer, Patrick ;

Christen, Philipp ;

Massou, Stephane ;

Portais, Jean-Charles ;

Vorholt, Julia A. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (12) :4846-4851

[87] Methanotrophy below pH1 by a new Verrucomicrobia species [J].

Pol, Arjan ;

Heijmans, Klaas ;

Harhangi, Harry R. ;

Tedesco, Dario ;

Jetten, Mike S. M. ;

den Camp, Huub J. M. Op .

NATURE, 2007, 450 (7171) :874-U17

[88] Generation of formate by the formyltransferase/hydrolase complex (Fhc) from Methylobacterium extorquens AM1 [J].

Pomper, BK ;

Saurel, O ;

Milon, A ;

Vorholt, JA .

FEBS LETTERS, 2002, 523 (1-3) :133-137

[89] A methenyl tetrahydromethanopterin cyclohydrolase and a methenyl tetrahydrofolate cyclohydrolase in Methylobacterium extorquens AM1 [J].

Pomper, BK ;

Vorholt, JA ;

Chistoserdova, L ;

Lidstrom, ME ;

Thauer, RK .

EUROPEAN JOURNAL OF BIOCHEMISTRY, 1999, 261 (02) :475-480

[90] Stable-isotope probing as a tool in microbial ecology [J].

Radajewski, S ;

Ineson, P ;

Parekh, NR ;

Murrell, JC .

NATURE, 2000, 403 (6770) :646-649

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