DNA - protein interactions and bacterial chromosome architecture

被引:80
作者
Stavans, Joel [1 ]
Oppenheim, Amos
机构
[1] Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
[2] Hebrew Univ Jerusalem, Hadassah Med Sch, Dept Mol Genet & Biotechnol, IL-91010 Jerusalem, Israel
关键词
D O I
10.1088/1478-3975/3/4/R01
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bacteria, like eukaryotic organisms, must compact the DNA molecule comprising their genome and form a functional chromosome. Yet, bacteria do it differently. A number of factors contribute to genome compaction and organization in bacteria, including entropic effects, supercoiling and DNA-protein interactions. A gamut of new experimental techniques have allowed new advances in the investigation of these factors, and spurred much interest in the dynamic response of the chromosome to environmental cues, segregation, and architecture, during both exponential and stationary phases. We review these recent developments with emphasis on the multifaceted roles that DNA-protein interactions play.
引用
收藏
页码:R1 / R10
页数:10
相关论文
共 110 条
[21]   Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1 [J].
Dame, RT ;
Wyman, C ;
Wurm, R ;
Wagner, R ;
Goosen, N .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (03) :2146-2150
[22]   Organization of supercoil domains and their reorganization by transcription [J].
Deng, S ;
Stein, RA ;
Higgins, NP .
MOLECULAR MICROBIOLOGY, 2005, 57 (06) :1511-1521
[23]  
DIGATE RJ, 1988, J BIOL CHEM, V263, P13366
[24]   PROTEIN-HU IN THE ENZYMATIC REPLICATION OF THE CHROMOSOMAL ORIGIN OF ESCHERICHIA-COLI [J].
DIXON, NE ;
KORNBERG, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1984, 81 (02) :424-428
[25]   H-NS: A universal regulator for a dynamic genome [J].
Dorman, CJ .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (05) :391-400
[26]   Does RNA polymerase help drive chromosome segregation in bacteria? [J].
Dworkin, J ;
Losick, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (22) :14089-14094
[27]   Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes [J].
Egan, ES ;
Fogel, MA ;
Waldor, MK .
MOLECULAR MICROBIOLOGY, 2005, 56 (05) :1129-1138
[28]   SetB:: an integral membrane protein that affects chromosome segregation in Escherichia coli [J].
Espeli, O ;
Nurse, P ;
Levine, C ;
Lee, C ;
Marians, KJ .
MOLECULAR MICROBIOLOGY, 2003, 50 (02) :495-509
[29]   A cis-acting sequence involved in chromosome segregation in Escherichia coli [J].
Fekete, RA ;
Chattoraj, DK .
MOLECULAR MICROBIOLOGY, 2005, 55 (01) :175-183
[30]   DNA DYNAMIC FLEXIBILITY AND PROTEIN RECOGNITION - DIFFERENTIAL STIMULATION BY BACTERIAL HISTONE-LIKE PROTEIN HU [J].
FLASHNER, Y ;
GRALLA, JD .
CELL, 1988, 54 (05) :713-721