TM4 microarray software suite

被引:1390
作者
Saeed, Alexander I. [1 ]
Hagabati, Nirmal K. [1 ]
Braisted, John C. [1 ]
Liang, Wei [1 ]
Sharov, Vasily [1 ]
Howe, Eleanor A. [1 ]
Li, Jianwei [1 ]
Thiagarajan, Mathangi [1 ]
White, Joseph A. [1 ]
Quackenbush, John [1 ]
机构
[1] Inst Genom Res, Dept Bioinformat, Rockville, MD USA
来源
DNA MICROARRAYS, PART B: DATABASES AND STATISTICS | 2006年 / 411卷
基金
美国国家科学基金会;
关键词
D O I
10.1016/S0076-6879(06)11009-5
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Powerful specialized software is essential for managing, quantifying, and ultimately deriving scientific insight from results of a microarray experiment. We have developed a suite of software applications, known as TM4, to support such gene expression studies. The suite consists of open-source tools for data management and reporting, image analysis, normalization and pipeline control, and data mining and visualization. An integrated MIAME-compliant MySQL database is included. This chapter describes each component of the suite and includes a sample analysis walk-through.
引用
收藏
页码:134 / +
页数:66
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