Directed evolution: new parts and optimized function

被引:98
作者
Dougherty, Michael J. [1 ]
Arnold, Frances H. [1 ,2 ]
机构
[1] CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
[2] CALTECH, Div Biochem & Mol Biophys, Pasadena, CA 91125 USA
关键词
TRANSCRIPTION FACTORS; SPECIFICITY; PROTEIN; EXPRESSION; DESIGN; GLYCOSYLTRANSFERASE; BIOSYNTHESIS; CONSTRUCTION; SYNTHASE; BIOLOGY;
D O I
10.1016/j.copbio.2009.08.005
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Constructing novel biological systems that function in a robust and predictable manner requires better methods for discovering new functional molecules and for optimizing their assembly in novel biological contexts. By enabling functional diversification and optimization in the absence of detailed mechanistic understanding, directed evolution is a powerful complement to 'rational' engineering approaches. Aided by clever selection schemes, directed evolution has generated new parts for genetic circuits, cell-cell communication systems, and non-natural metabolic pathways in bacteria.
引用
收藏
页码:486 / 491
页数:6
相关论文
共 31 条
[1]   Environmental signal integration by a modular AND gate [J].
Anderson, J. Christopher ;
Voigt, Christopher A. ;
Arkin, Adam P. .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3
[2]   Directed Evolution of Methanococcus jannaschii Citramalate Synthase for Biosynthesis of 1-Propanol and 1-Butanol by Escherichia coli [J].
Atsumi, Shota ;
Liao, James C. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (24) :7802-7808
[3]   Using engineered scaffold interactions to reshape MAP kinase pathway signaling dynamics [J].
Bashor, Caleb J. ;
Helman, Noah C. ;
Yan, Shude ;
Lim, Wendell A. .
SCIENCE, 2008, 319 (5869) :1539-1543
[4]   Synthesis of Methyl Halides from Biomass Using Engineered Microbes [J].
Bayer, Travis S. ;
Widmaier, Daniel M. ;
Temme, Karsten ;
Mirsky, Ethan A. ;
Santi, Daniel V. ;
Voigt, Christopher A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (18) :6508-6515
[5]   Refinement and standardization of synthetic biological parts and devices [J].
Canton, Barry ;
Labno, Anna ;
Endy, Drew .
NATURE BIOTECHNOLOGY, 2008, 26 (07) :787-793
[6]   Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR [J].
Collins, Cynthia H. ;
Leadbetter, Jared R. ;
Arnold, Frances H. .
NATURE BIOTECHNOLOGY, 2006, 24 (06) :708-712
[7]   Regulation of endogenous gene expression using small molecule-controlled engineered zinc-finger protein transcription factors [J].
Dent, C. L. ;
Lau, G. K. K. ;
Drake, E. A. ;
Yoon, A. ;
Case, C. C. ;
Gregory, P. D. .
GENE THERAPY, 2007, 14 (18) :1362-1369
[8]  
DESAI TA, 2009, NUCL ACIDS RES
[9]   Diversity-based, model-guided construction of synthetic gene networks with predicted functions [J].
Ellis, Tom ;
Wang, Xiao ;
Collins, James J. .
NATURE BIOTECHNOLOGY, 2009, 27 (05) :465-471
[10]   Directed evolution can rapidly improve the activity of chimeric assembly-line enzymes [J].
Fischbach, Michael A. ;
Lai, Jonathan R. ;
Roche, Eric D. ;
Walsh, Christopher T. ;
Liu, David R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (29) :11951-11956