Proteomics of the peroxisome

被引:35
作者
Saleem, R. A. [1 ]
Smith, J. J. [1 ]
Aitchison, J. D. [1 ]
机构
[1] Inst Syst Biol, Seattle, WA 98103 USA
来源
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH | 2006年 / 1763卷 / 12期
关键词
peroxisome; proteome; mass spectrometry; protein quantification; protein localization; in silico prediction;
D O I
10.1016/j.bbamcr.2006.09.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Genomes provide us with a blue print for the potential of a cell. However, the activity of a cell is expressed in its proteome. Full understanding of the complexity of cells demands a comprehensive view of the proteome; its interactions, activity states and organization. Comprehensive proteomic approaches applied to peroxisomes have yielded new insights into the organelle and its dynamic interplay with other cellular structures. As technologies and methodologies improve, proteomics hold the promise for new discoveries of peroxisome function and a full description of this dynamic organelle. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:1541 / 1551
页数:11
相关论文
共 74 条
[1]   Pex8p:: An intraperioxisomal organizer of the peroxisomal import machinery [J].
Agne, B ;
Meindl, NM ;
Niederhoff, K ;
Einwächter, H ;
Rehling, P ;
Sickmann, A ;
Meyer, HE ;
Girzalsky, W ;
Kunau, WH .
MOLECULAR CELL, 2003, 11 (03) :635-646
[2]   PEX12 interacts with PEX5 and PEX10 and acts downstream of receptor docking in peroxisomal matrix protein import [J].
Chang, CC ;
Warren, DS ;
Sacksteder, KA ;
Gould, SJ .
JOURNAL OF CELL BIOLOGY, 1999, 147 (04) :761-773
[3]   A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells [J].
Choe, LH ;
Aggarwal, K ;
Franck, Z ;
Lee, KH .
ELECTROPHORESIS, 2005, 26 (12) :2437-2449
[4]   Simultaneous proteomic profiling of four different growth states of human fibroblasts, using amine-reactive isobaric tagging reagents and tandem mass spectrometry [J].
Cong, YS ;
Fan, E ;
Wang, E .
MECHANISMS OF AGEING AND DEVELOPMENT, 2006, 127 (04) :332-343
[5]   Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-Metabolic labeling [J].
Conrads, TP ;
Alving, K ;
Veenstra, TD ;
Belov, ME ;
Anderson, GA ;
Anderson, DJ ;
Lipton, MS ;
Pasa-Tolic, L ;
Udseth, HR ;
Chrisler, WB ;
Thrall, BD ;
Smith, RD .
ANALYTICAL CHEMISTRY, 2001, 73 (09) :2132-2139
[6]   RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers [J].
de Hoog, CL ;
Foster, LJ ;
Mann, M .
CELL, 2004, 117 (05) :649-662
[7]   Pex10p links the ubiquitin conjugating enzyme Pex4p to the protein import machinery of the peroxisome [J].
Eckert, JH ;
Johnsson, N .
JOURNAL OF CELL SCIENCE, 2003, 116 (17) :3623-3634
[8]   In silico prediction of the peroxisomal proteome in fungi, plants and animals [J].
Emanuelsson, O ;
Elofsson, A ;
von Heijne, G ;
Cristóbal, S .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 330 (02) :443-456
[9]   Quantitative cancer proteomics: Stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research [J].
Everley, PA ;
Krijgsveld, J ;
Zetter, BR ;
Gygi, SP .
MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (07) :729-735
[10]   PEX3 functions as a PEX19 docking factor in the import of class I peroxisomal membrane proteins [J].
Fang, Y ;
Morrell, JC ;
Jones, JM ;
Gould, SJ .
JOURNAL OF CELL BIOLOGY, 2004, 164 (06) :863-875