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msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots
被引:73
作者
:
Hellenthal, Garrett
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Hellenthal, Garrett
论文数:
引用数:
h-index:
机构:
Stephens, Matthew
机构
:
[1]
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
[2]
Univ Chicago, Dept Stat, Chicago, IL 60637 USA
来源
:
BIOINFORMATICS
|
2007年
/ 23卷
/ 04期
关键词
:
D O I
:
10.1093/bioinformatics/btl622
中图分类号
:
Q5 [生物化学];
学科分类号
:
071010 ;
081704 ;
摘要
:
We have incorporated both crossover and gene conversion hotspots into an existing coalescent-based program for simulating genetic variation data for a sample of chromosomes from a population.
引用
收藏
页码:520 / 521
页数:2
相关论文
共 8 条
[1]
Generating samples under a Wright-Fisher neutral model of genetic variation
[J].
Hudson, RR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
Hudson, RR
.
BIOINFORMATICS,
2002,
18
(02)
:337
-338
[2]
PROPERTIES OF A NEUTRAL ALLELE MODEL WITH INTRAGENIC RECOMBINATION
[J].
HUDSON, RR
论文数:
0
引用数:
0
h-index:
0
HUDSON, RR
.
THEORETICAL POPULATION BIOLOGY,
1983,
23
(02)
:183
-201
[3]
Intense and highly localized gene conversion activity in human meiotic crossover hot spots
[J].
Jeffreys, AJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Jeffreys, AJ
;
May, CA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
May, CA
.
NATURE GENETICS,
2004,
36
(02)
:151
-156
[4]
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
[J].
Jeffreys, AJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Jeffreys, AJ
;
Kauppi, L
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Kauppi, L
;
Neumann, R
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Neumann, R
.
NATURE GENETICS,
2001,
29
(02)
:217
-222
[5]
A fine-scale map of recombination rates and hotspots across the human genome
[J].
Myers, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Myers, S
;
Bottolo, L
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Bottolo, L
;
Freeman, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Freeman, C
;
McVean, G
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
McVean, G
;
Donnelly, P
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Donnelly, P
.
SCIENCE,
2005,
310
(5746)
:321
-324
[6]
Calibrating a coalescent simulation of human genome sequence variation
[J].
Schaffner, SF
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Schaffner, SF
;
Foo, C
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Foo, C
;
Gabriel, S
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Gabriel, S
;
Reich, D
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Reich, D
;
Daly, MJ
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Daly, MJ
;
Altshuler, D
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Altshuler, D
.
GENOME RESEARCH,
2005,
15
(11)
:1576
-1583
[7]
THE DOUBLE-STRAND-BREAK REPAIR MODEL FOR RECOMBINATION
[J].
SZOSTAK, JW
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
SZOSTAK, JW
;
ORRWEAVER, TL
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
ORRWEAVER, TL
;
ROTHSTEIN, RJ
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
ROTHSTEIN, RJ
;
STAHL, FW
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
STAHL, FW
.
CELL,
1983,
33
(01)
:25
-35
[8]
Wiuf C, 2000, GENETICS, V155, P451
←
1
→
共 8 条
[1]
Generating samples under a Wright-Fisher neutral model of genetic variation
[J].
Hudson, RR
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA
Hudson, RR
.
BIOINFORMATICS,
2002,
18
(02)
:337
-338
[2]
PROPERTIES OF A NEUTRAL ALLELE MODEL WITH INTRAGENIC RECOMBINATION
[J].
HUDSON, RR
论文数:
0
引用数:
0
h-index:
0
HUDSON, RR
.
THEORETICAL POPULATION BIOLOGY,
1983,
23
(02)
:183
-201
[3]
Intense and highly localized gene conversion activity in human meiotic crossover hot spots
[J].
Jeffreys, AJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Jeffreys, AJ
;
May, CA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
May, CA
.
NATURE GENETICS,
2004,
36
(02)
:151
-156
[4]
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
[J].
Jeffreys, AJ
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Jeffreys, AJ
;
Kauppi, L
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Kauppi, L
;
Neumann, R
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
Neumann, R
.
NATURE GENETICS,
2001,
29
(02)
:217
-222
[5]
A fine-scale map of recombination rates and hotspots across the human genome
[J].
Myers, S
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Myers, S
;
Bottolo, L
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Bottolo, L
;
Freeman, C
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Freeman, C
;
McVean, G
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
McVean, G
;
Donnelly, P
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Univ Oxford, Dept Stat, Oxford OX1 3TG, England
Donnelly, P
.
SCIENCE,
2005,
310
(5746)
:321
-324
[6]
Calibrating a coalescent simulation of human genome sequence variation
[J].
Schaffner, SF
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Schaffner, SF
;
Foo, C
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Foo, C
;
Gabriel, S
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Gabriel, S
;
Reich, D
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Reich, D
;
Daly, MJ
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Daly, MJ
;
Altshuler, D
论文数:
0
引用数:
0
h-index:
0
机构:
Broad Inst, Program Med & Populat Genet, Cambridge, MA 02139 USA
Altshuler, D
.
GENOME RESEARCH,
2005,
15
(11)
:1576
-1583
[7]
THE DOUBLE-STRAND-BREAK REPAIR MODEL FOR RECOMBINATION
[J].
SZOSTAK, JW
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
SZOSTAK, JW
;
ORRWEAVER, TL
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
ORRWEAVER, TL
;
ROTHSTEIN, RJ
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
ROTHSTEIN, RJ
;
STAHL, FW
论文数:
0
引用数:
0
h-index:
0
机构:
HARVARD UNIV, SCH MED, DEPT BIOL CHEM, BOSTON, MA 02115 USA
STAHL, FW
.
CELL,
1983,
33
(01)
:25
-35
[8]
Wiuf C, 2000, GENETICS, V155, P451
←
1
→