A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

被引:277
作者
Lefebvre, Celine [1 ,2 ,3 ]
Rajbhandari, Presha [1 ,2 ,3 ]
Alvarez, Mariano J. [1 ,2 ,3 ]
Bandaru, Pradeep [1 ,2 ,3 ]
Lim, Wei Keat [1 ,4 ]
Sato, Mai [5 ,6 ]
Wang, Kai [1 ,4 ]
Sumazin, Pavel [1 ,2 ,3 ]
Kustagi, Manjunath [1 ,2 ,3 ]
Bisikirska, Brygida C. [1 ,2 ,3 ]
Basso, Katia [5 ,6 ]
Beltrao, Pedro [7 ]
Krogan, Nevan [7 ]
Gautier, Jean [5 ,6 ]
Dalla-Favera, Riccardo [5 ,6 ,8 ,9 ]
Califano, Andrea [1 ,2 ,3 ,4 ,5 ,6 ]
机构
[1] Columbia Univ, Ctr Computat Biol & Bioinformat, New York, NY 10032 USA
[2] Columbia Univ, Joint Ctr Syst Biol, New York, NY 10032 USA
[3] Columbia Univ, Columbia Initiat Syst Biol, New York, NY 10032 USA
[4] Columbia Univ, Dept Biomed Informat, New York, NY 10032 USA
[5] Columbia Univ, Inst Canc Genet, New York, NY 10032 USA
[6] Columbia Univ, Herbert Irving Comprehens Canc Ctr, New York, NY 10032 USA
[7] Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94143 USA
[8] Columbia Univ, Dept Pathol & Cell Biol, New York, NY 10032 USA
[9] Columbia Univ, Dept Genet & Dev, New York, NY 10032 USA
关键词
B cell; germinal centers; interactome; master regulator; PROTEIN-PROTEIN INTERACTIONS; TRANSCRIPTIONAL NETWORK; BIOLOGY APPROACH; C-MYC; DNA; MODULATORS; ONCOGENES; REVEALS; BINDING; SYSTEMS;
D O I
10.1038/msb.2010.31
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Assembly of a transcriptional and post-translational molecular interaction network in B cells, the human B-cell interactome (HBCI), reveals a hierarchical, transcriptional control module, where MYB and FOXM1 act as synergistic master regulators of proliferation in the germinal center (GC). Eighty percent of genes jointly regulated by these transcription factors are activated in the GC, including those encoding proteins in a complex regulating DNA pre-replication, replication, and mitosis. These results indicate that the HBCI analysis can be used for the identification of determinants of major human cell phenotypes and provides a paradigm of general applicability to normal and pathologic tissues. Molecular Systems Biology 377; published online 8 June 2010; doi:10.1038/msb.2010.31
引用
收藏
页数:10
相关论文
共 40 条
[21]   Modeling turbulent flow with implicit LES [J].
Margolin, LG ;
Rider, WJ ;
Grinstein, FF .
JOURNAL OF TURBULENCE, 2006, 7 (15) :1-27
[22]   The oncoprotein LMO2 is expressed in normal germinal-center B cells and in human B-cell lymphomas [J].
Natkunam, Yasodha ;
Zhao, Shuchun ;
Mason, David Y. ;
Chen, Jun ;
Taidi, Behnaz ;
Jones, Margaret ;
Hammer, Anne S. ;
Dutoit, Stephen Hamilton ;
Lossos, Izidore S. ;
Levy, Ronald .
BLOOD, 2007, 109 (04) :1636-1642
[23]   NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth [J].
Palomero, Teresa ;
Lim, Wei Keat ;
Odom, Duncan T. ;
Sulis, Maria Luisa ;
Real, Pedro J. ;
Margolin, Adam ;
Barnes, Kelly C. ;
O'Neil, Jennifer ;
Neuberg, Donna ;
Weng, Andrew P. ;
Aster, Jon C. ;
Sigaux, Francois ;
Soulier, Jean ;
Look, A. Thomas ;
Young, Richard A. ;
Califano, Andrea ;
Ferrando, Adolfo A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (48) :18261-18266
[24]   Mining for regulatory programs in the cancer transcriptome [J].
Rhodes, DR ;
Kalyana-Sundaram, S ;
Mahavisno, V ;
Barrette, TR ;
Ghosh, D ;
Chinnaiyan, AM .
NATURE GENETICS, 2005, 37 (06) :579-583
[25]   Towards a proteome-scale map of the human protein-protein interaction network [J].
Rual, JF ;
Venkatesan, K ;
Hao, T ;
Hirozane-Kishikawa, T ;
Dricot, A ;
Li, N ;
Berriz, GF ;
Gibbons, FD ;
Dreze, M ;
Ayivi-Guedehoussou, N ;
Klitgord, N ;
Simon, C ;
Boxem, M ;
Milstein, S ;
Rosenberg, J ;
Goldberg, DS ;
Zhang, LV ;
Wong, SL ;
Franklin, G ;
Li, SM ;
Albala, JS ;
Lim, JH ;
Fraughton, C ;
Llamosas, E ;
Cevik, S ;
Bex, C ;
Lamesch, P ;
Sikorski, RS ;
Vandenhaute, J ;
Zoghbi, HY ;
Smolyar, A ;
Bosak, S ;
Sequerra, R ;
Doucette-Stamm, L ;
Cusick, ME ;
Hill, DE ;
Roth, FP ;
Vidal, M .
NATURE, 2005, 437 (7062) :1173-1178
[26]   GeneWays:: a system for extracting, analyzing, visualizing, and integrating molecular pathway data [J].
Rzhetsky, A ;
Iossifov, I ;
Koike, T ;
Krauthammer, M ;
Kra, P ;
Morris, M ;
Yu, H ;
Duboué, PA ;
Weng, WB ;
Wilbur, WJ ;
Hatzivassiloglou, V ;
Friedman, C .
JOURNAL OF BIOMEDICAL INFORMATICS, 2004, 37 (01) :43-53
[27]   Impaired lymphocyte development and function in Clast5/Stra13/DEC1-transgenic mice [J].
Seimiya, M ;
Wada, A ;
Kawamura, K ;
Sakamoto, A ;
Ohkubo, Y ;
Okada, S ;
Hatano, M ;
Tokuhisa, T ;
Watanabe, T ;
Saisho, H ;
Tagawa, M ;
O-Wang, J .
EUROPEAN JOURNAL OF IMMUNOLOGY, 2004, 34 (05) :1322-1332
[28]   Tissue-specific regulatory elements in mammalian promoters [J].
Smith, Andrew D. ;
Sumazin, Pavel ;
Zhang, Michael Q. .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[29]  
SMYTHE C, 1991, METHOD CELL BIOL, V35, P449
[30]   Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [J].
Subramanian, A ;
Tamayo, P ;
Mootha, VK ;
Mukherjee, S ;
Ebert, BL ;
Gillette, MA ;
Paulovich, A ;
Pomeroy, SL ;
Golub, TR ;
Lander, ES ;
Mesirov, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (43) :15545-15550