A Projector-Embedding Approach for Multiscale Coupled-Cluster Calculations Applied to Citrate Synthase

被引:57
作者
Bennie, Simon J. [1 ]
van der Kamp, Marc W. [1 ,2 ]
Pennifold, Robert C. R. [1 ]
Stella, Martina [1 ,3 ]
Manby, Frederick R. [1 ]
Mulholland, Adrian J. [1 ]
机构
[1] Univ Bristol, Sch Chem, Ctr Computat Chem, Cantocks Close, Bristol BS8 1TS, Avon, England
[2] Univ Bristol, Sch Biochem, Biomed Sci Bldg,Univ Walk, Bristol BS8 1TD, Avon, England
[3] Kings Coll London, Dept Phys, London WC2R 2LS, England
基金
英国生物技术与生命科学研究理事会; 英国工程与自然科学研究理事会;
关键词
DENSITY-FUNCTIONAL-THEORY; MECHANICAL/MOLECULAR MECHANICAL CALCULATIONS; CORRELATED MOLECULAR CALCULATIONS; GAUSSIAN-BASIS SETS; AB-INITIO QM/MM; ENZYMATIC-REACTIONS; ELECTRON CORRELATION; ATOMIC-ORBITALS; BARRIER HEIGHTS; WAVE-FUNCTION;
D O I
10.1021/acs.jctc.6b00285
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Projector-based embedding has recently emerged as a robust multiscale method for the calculation of various electronic molecular properties. We present the coupling of projector embedding with quantum mechanics/molecular mechanics modeling and apply it for the first time to an enzyme-catalyzed reaction. Using projector-based embedding, we combine coupled-cluster theory, density-functional theory (DFT), and molecular mechanics to compute energies for the proton abstraction from acetyl-coenzyme A by citrate synthase. By embedding correlated ab initio methods in DFT we eliminate functional sensitivity and obtain high-accuracy profiles in a procedure that is straightforward to apply.
引用
收藏
页码:2689 / 2697
页数:9
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