A comprehensive study of classification methods for medical diagnosis

被引:79
作者
Bocklitz, Thomas [1 ]
Putsche, Melanie [1 ]
Stueber, Carsten [2 ]
Kaes, Josef [2 ]
Niendorf, Axel [3 ]
Roesch, Petra [1 ]
Popp, Juergen [1 ,4 ]
机构
[1] Univ Jena, Inst Phys Chem, D-07743 Jena, Germany
[2] Univ Leipzig, Inst Soft Matter Phys, D-04103 Leipzig, Germany
[3] Univ Hamburg, Ctr Clin, D-20246 Hamburg, Germany
[4] Inst Photon Technol, D-07745 Jena, Germany
关键词
breast cancer; chemometric analysis; pattern recognition; Raman spectroscopy; ARTIFICIAL NEURAL-NETWORKS; RAMAN-SPECTROSCOPY; IDENTIFICATION; CELLS; FLUORESCENCE;
D O I
10.1002/jrs.2529
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
In this model study, we developed a method to distinguish between breast cancer cells and normal epithelial cells, which is in principal suitable for online diagnosis by Raman spectroscopy. Two cell lines were chosen as model systems for cancer and normal tissue. Both cell lines consist of epithelial cells, but the cells of the MCF-7 series are carcinogenic, where the MCF-10A cells are normal growing. An algorithm is presented for distinguishing cells of the MCF-7 and MCF-10A cell lines, which has an accuracy rate of above 99%. For this purpose, two classification steps are utilized. The first step, the so-called top-level classifier searches for Raman spectra, which are measured in the nuclei region. In the second step, a wide range of discriminant models are possible and these models are compared. The classification rates are always estimated using a cross-validation and a holdout-validation procedure to ensure the ability of the routine diagnosis to work in clinical environments. Copyright (C) 2009 John Wiley & Sons, Ltd.
引用
收藏
页码:1759 / 1765
页数:7
相关论文
共 31 条
[1]  
[Anonymous], 2002, HDB VIBRATIONAL SPEC
[2]  
Bishop Christopher M, 1995, Neural networks for pattern recognition
[3]   A tutorial on Support Vector Machines for pattern recognition [J].
Burges, CJC .
DATA MINING AND KNOWLEDGE DISCOVERY, 1998, 2 (02) :121-167
[4]   Reference database of Raman spectra of biological molecules [J].
De Gelder, Joke ;
De Gussem, Kris ;
Vandenabeele, Peter ;
Moens, Luc .
JOURNAL OF RAMAN SPECTROSCOPY, 2007, 38 (09) :1133-1147
[5]  
Dimitriadou E., 2007, e1071 Misc functions of the department of statistics
[6]   The hallmarks of cancer [J].
Hanahan, D ;
Weinberg, RA .
CELL, 2000, 100 (01) :57-70
[7]   UV-resonance Raman spectroscopic study of human plasma of healthy donors and patients with thrombotic microangiopathy [J].
Harz, M. ;
Claus, R. A. ;
Bockmeyer, C. L. ;
Baum, M. ;
Rosch, P. ;
Kentouche, K. ;
Deigner, H. -P ;
Popp, J. .
BIOPOLYMERS, 2006, 82 (04) :317-324
[8]   Analysis of single blood cells for CSF diagnostics via a combination of fluorescence staining and micro-Raman spectroscopy [J].
Harz, Michaela ;
Kiehntopf, Michael ;
Stoeckel, Stephan ;
Roesch, Petra ;
Deufel, Thomas ;
Popp, Juergen .
ANALYST, 2008, 133 (10) :1416-1423
[9]   Direct analysis of clinical relevant single bacterial cells from cerebrospinal fluid during bacterial meningitis by means of micro-Raman spectroscopy [J].
Harz, Michaela ;
Kiehntopf, Michael ;
Stoeckel, Stephan ;
Roesch, Petra ;
Straube, Eberhard ;
Deufel, Thomas ;
Popp, Juergen .
JOURNAL OF BIOPHOTONICS, 2009, 2 (1-2) :70-80
[10]   Practical algorithm for reducing convex spike noises on a spectrum [J].
Katsumoto, Y ;
Ozaki, Y .
APPLIED SPECTROSCOPY, 2003, 57 (03) :317-322