Promiscuous binding of ligands by β-lactoglobulin involves hydrophobic interactions and plasticity

被引:56
作者
Konuma, Tsuyoshi
Sakurai, Kazumasa
Goto, Yuji
机构
[1] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[2] Japan Sci & Technol Agcy, CREST, Suita, Osaka 5650871, Japan
关键词
calycin superfamily; protein-ligand interaction; palmitic acid; NMR; Tanford transition;
D O I
10.1016/j.jmb.2007.01.077
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bovine-lactoglobulin (beta LG) binds a variety of hydrophobic ligands, though precisely how is not clear. To understand the structural basis of this promiscuous binding, we studied the-interaction of beta LG with palmitic acid (PA) using heteronuclear NMR spectroscopy. The titration was monitored using tryptophan fluorescence and a HSQC spectrum confirmed a 1:1 stoichiometry for the PA-beta LG complex. Upon the binding of PA, signal disappearances and large changes in chemical shifts were observed for the residues located at the entrance and bottom of the cavity, respectively. This observation indicates that the lower region makes a rigid connection with PA whereas the entrance is more flexible. The result is in contrast to the binding of PA to intestinal fatty acid-binding protein, another member of the calycin superfamily, in which structural consolidation occurs upon ligand binding. On the other hand, the ability of beta LG to accommodate various hydrophobic ligands resembles that of GroEL, in which a large hydrophobic cavity and flexible binding site confer the ability to bind various hydrophobic substrates. Considering these observations, it is suggested that, in addition to the presence of the hydrophobic cavity, the plasticity of the entrance region makes possible the binding of hydrophobic ligands of various shapes. Thus, in contrast to the specific binding seen for many enzymes, beta LG provides an example of binding with low specificity but high affinity, which may play an important role in protein-ligand and protein-protein networks. (c) 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:209 / 218
页数:10
相关论文
共 47 条
[1]   THE CRYSTAL-STRUCTURE OF THE BACTERIAL CHAPERONIN GROEL AT 2.8-ANGSTROM [J].
BRAIG, K ;
OTWINOWSKI, Z ;
HEGDE, R ;
BOISVERT, DC ;
JOACHIMIAK, A ;
HORWICH, AL ;
SIGLER, PB .
NATURE, 1994, 371 (6498) :578-586
[2]   Bovine beta-lactoglobulin at 1.8 angstrom resolution - Still an enigmatic lipocalin [J].
Brownlow, S ;
Cabral, JHM ;
Cooper, R ;
Flower, DR ;
Yewdall, SJ ;
Polikarpov, I ;
North, ACT ;
Sawyer, L .
STRUCTURE, 1997, 5 (04) :481-495
[3]   Comparative interactomics [J].
Cesareni, G ;
Ceol, A ;
Gavrila, C ;
Palazzi, LM ;
Persico, M ;
Schneider, MV .
FEBS LETTERS, 2005, 579 (08) :1828-1833
[4]   GroEL recognises sequential and non-sequential linear structural motifs compatible with extended β-strands and α-helices [J].
Chatellier, J ;
Buckle, AM ;
Fersht, AR .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (01) :163-172
[5]   Competitive binding of fatty acids and the fluorescent probe 1-8-anilinonaphthalene sulfonate to bovine β-lactoglobulin [J].
Collini, M ;
D'Alfonso, L ;
Molinari, H ;
Ragona, L ;
Catalano, M ;
Baldini, G .
PROTEIN SCIENCE, 2003, 12 (08) :1596-1603
[6]   Relationship between enzyme specificity and the backbone dynamics of free and inhibited α-lytic protease [J].
Davis, JH ;
Agard, DA .
BIOCHEMISTRY, 1998, 37 (21) :7696-7707
[7]   Macromollecullar recognition [J].
Deremble, C ;
Lavery, R .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2005, 15 (02) :171-175
[8]   Flexible nets - The roles of intrinsic disorder in protein interaction networks [J].
Dunker, AK ;
Cortese, MS ;
Romero, P ;
Iakoucheva, LM ;
Uversky, VN .
FEBS JOURNAL, 2005, 272 (20) :5129-5148
[9]   PROBING THE FATTY-ACID-BINDING SITE OF BETA-LACTOGLOBULINS [J].
FRAPIN, D ;
DUFOUR, E ;
HAERTLE, T .
JOURNAL OF PROTEIN CHEMISTRY, 1993, 12 (04) :443-449
[10]   Predicting and harnessing protein flexibility in the design of species-specific inhibitors of thymidylate synthase [J].
Fritz, TA ;
Tondi, D ;
Finer-Moore, JS ;
Costi, MP ;
Stroud, RM .
CHEMISTRY & BIOLOGY, 2001, 8 (10) :981-995