Post-analysis follow-up and validation of microarray experiments

被引:305
作者
Chuaqui, RF
Bonner, RF
Best, CJM
Gillespie, JW
Flaig, MJ
Hewitt, SM
Phillips, JL
Krizman, DB
Tangrea, MA
Ahram, M
Linehan, WM
Knezevic, V
Emmert-Buck, MR [1 ]
机构
[1] NCI, Pathogenet Unit, Pathol Lab, Bethesda, MD 20892 USA
[2] NCI, Urol Oncol Branch, Ctr Canc Res, Bethesda, MD 20892 USA
关键词
D O I
10.1038/ng1034
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Measurement of gene-expression profiles using microarray technology is becoming increasingly popular among the biomedical research community. Although there has been great progress in this field, investigators are still confronted with a difficult question after completing their experiments: how to validate the large data sets that are generated? This review summarizes current approaches to verifying global expression results, discusses the caveats that must be considered, and describes some methods that are being developed to address outstanding problems.
引用
收藏
页码:509 / 514
页数:6
相关论文
共 73 条
  • [1] Proteomic analysis of human prostate cancer
    Ahram, M
    Best, CJM
    Flaig, MJ
    Gillespie, JW
    Leiva, IM
    Chuaqui, RF
    Zhou, G
    Shu, HJ
    Duray, PH
    Linehan, WM
    Raffeld, M
    Ornstein, DK
    Zhao, YM
    Petricoin, EF
    Emmert-Buck, MR
    [J]. MOLECULAR CARCINOGENESIS, 2002, 33 (01) : 9 - 15
  • [2] Identification of genes associated with head and neck carcinogenesis by cDNA microarray comparison between matched primary normal epithelial and squamous carcinoma cells
    Al Moustafa, AE
    Alaoui-Jamali, MA
    Batist, G
    Hernandez-Perez, M
    Serruya, C
    Alpert, L
    Black, MJ
    Sladek, R
    Foulkes, WD
    [J]. ONCOGENE, 2002, 21 (17) : 2634 - 2640
  • [3] Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis
    Alevizos, I
    Mahadevappa, M
    Zhang, X
    Ohyama, H
    Kohno, Y
    Posner, M
    Gallagher, GT
    Varvares, M
    Cohen, D
    Kim, D
    Kent, R
    Donoff, RB
    Todd, R
    Yung, CM
    Warrington, JA
    Wong, DTW
    [J]. ONCOGENE, 2001, 20 (43) : 6196 - 6204
  • [4] Fluorescent cDNA microarray hybridization reveals complexity and heterogeneity of cellular genotoxic stress responses
    Amundson, SA
    Bittner, M
    Chen, YD
    Trent, J
    Meltzer, P
    Fornace, AJ
    [J]. ONCOGENE, 1999, 18 (24) : 3666 - 3672
  • [5] Identification of genes over-expressed in small cell lung carcinoma using suppression subtractive hybridization and cDNA microarray expression analysis
    Bangur, CS
    Switzer, A
    Fan, LQ
    Marton, MJ
    Meyer, MR
    Wang, TT
    [J]. ONCOGENE, 2002, 21 (23) : 3814 - 3825
  • [6] BATTIFORA H, 1986, LAB INVEST, V55, P244
  • [7] Nuclei and subnuclei gene expression profiling in mammalian brain
    Bonaventure, P
    Guo, HQ
    Tian, B
    Liu, XJ
    Bittner, A
    Roland, B
    Salunga, R
    Ma, XJ
    Kamme, F
    Meurers, B
    Bakker, M
    Jurzak, M
    Leysen, JE
    Erlander, MG
    [J]. BRAIN RESEARCH, 2002, 943 (01) : 38 - 47
  • [8] Cell sampling - Laser capture microdissection: Molecular analysis of tissue
    Bonner, RF
    EmmertBuck, M
    Cole, K
    Pohida, T
    Chuaqui, R
    Goldstein, S
    Liotta, LA
    [J]. SCIENCE, 1997, 278 (5342) : 1481 - &
  • [9] Hormone therapy failure in human prostate cancer:: Analysis by complementary DNA and issue microarrays
    Bubendorf, L
    Kolmer, M
    Kononen, J
    Koivisto, P
    Mousses, S
    Chen, YD
    Mahlamäki, E
    Schraml, P
    Moch, H
    Willi, N
    Elkahloun, AG
    Pretlow, TG
    Gasser, TC
    Mihatsch, MJ
    Sauter, G
    Kallioniemi, OP
    [J]. JOURNAL OF THE NATIONAL CANCER INSTITUTE, 1999, 91 (20) : 1758 - 1764
  • [10] Microarray analysis of gene expression during early adipocyte differentiation
    Burton, GR
    Guan, Y
    Nagarajan, R
    McGehee, RE
    [J]. GENE, 2002, 293 (1-2) : 21 - 31