An anchored YAC-STS framework for the rat genome

被引:1
作者
Cai, L
Lindpaintner, K
Browne, J
Gruetzner, F
Haaf, T
James, MR
Bihoreau, MT
机构
[1] Brigham & Womens Hosp, Dept Med, Div Cardiovasc, Boston, MA 02115 USA
[2] Childrens Hosp, Dept Cardiol, Boston, MA 02115 USA
[3] Harvard Univ, Sch Med, Dept Med, Boston, MA 02115 USA
[4] F Hoffmann La Roche & Co Ltd, Roche Genet, Div Pharmaceut, CH-4002 Basel, Switzerland
[5] Max Delbruck Ctr Mol Med, Berlin, Germany
[6] Univ Oxford, Wellcome Trust Ctr Human Genet, Oxford, England
[7] Max Planck Inst Mol Genet, Berlin, Germany
来源
CYTOGENETICS AND CELL GENETICS | 2000年 / 89卷 / 3-4期
关键词
D O I
10.1159/000015606
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
We report here the first YAC-STS framework for the rat genome. A total of 417 anchor microsatellite markers were used to screen a 10-fold redundant YAC library. One or more unambiguous YACs were identified for 372 markers. Assuming the genetic length of the rat genome to be 2,000 cM (Bihoreau et al, 1997b), the YAC-STS framework will provide, on average, one informative YAC clone every 5.4 cM, A total of 111 anchor markers used in this study were derived from known gene regions. We also demonstrated one of the important and immediate uses of this YAC-STS framework, which is to establish a correlation between the genetic and cytogenetic maps in the rat through FISH analysis. Copyright (C) 2000 S. Karger AG, Basel.
引用
收藏
页码:168 / 170
页数:3
相关论文
共 12 条
[1]   Correlation between genetic and cytogenetic maps of the rat [J].
Andoh, Y ;
Kuramoto, T ;
Yokoi, N ;
Maihara, T ;
Kitada, K ;
Serikawa, T .
MAMMALIAN GENOME, 1998, 9 (04) :287-293
[2]   Location of the first genetic locus, PKDr1, controlling autosomal dominant polycystic kidney disease in Han:SPRD cy/+ rat [J].
Bihoreau, MT ;
Ceccherini, I ;
Browne, J ;
Kranzlin, B ;
Romeo, G ;
Lathrop, GM ;
James, MR ;
Gretz, N .
HUMAN MOLECULAR GENETICS, 1997, 6 (04) :609-613
[3]   A linkage map of the rat genome derived from three F-2 crosses [J].
Bihoreau, MT ;
Gauguier, D ;
Kato, N ;
Hyne, G ;
Lindpaintner, K ;
Rapp, JP ;
James, MR ;
Lathrop, GM .
GENOME RESEARCH, 1997, 7 (05) :434-440
[4]   Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat, Rattus norvegicus [J].
Cai, L ;
Schalkwyk, LC ;
SchoeberleinStehli, A ;
Zee, RYL ;
Smith, A ;
Haaf, T ;
Georges, M ;
Lehrach, H ;
Lindpaintner, K .
GENOMICS, 1997, 39 (03) :385-392
[5]   An integrated genetic linkage map with 1137 markers constructed from five F2 crosses of autoimmune disease-prone and -resistant inbred rat strains [J].
Dracheva, SV ;
Remmers, EF ;
Chen, S ;
Chang, L ;
Gulko, PS ;
Kawahito, Y ;
Longman, RE ;
Wang, JP ;
Du, Y ;
Shepard, J ;
Ge, L ;
Joe, B ;
Kotake, S ;
Salstrom, JL ;
Furuya, T ;
Hoffman, J ;
Cannon, GW ;
Griffiths, MM ;
Wilder, RL .
GENOMICS, 2000, 63 (02) :202-226
[6]   Construction of a large-insert yeast artificial chromosome library of the rat genome [J].
Haldi, ML ;
Lim, P ;
Kaphingst, K ;
Akella, U ;
Whang, J ;
Lander, ES .
MAMMALIAN GENOME, 1997, 8 (04) :284-284
[7]   GENETIC-MAPPING OF A GENE CAUSING HYPERTENSION IN THE STROKE-PRONE SPONTANEOUSLY HYPERTENSIVE RAT [J].
JACOB, HJ ;
LINDPAINTNER, K ;
LINCOLN, SE ;
KUSUMI, K ;
BUNKER, RK ;
MAO, YP ;
GANTEN, D ;
DZAU, VJ ;
LANDER, ES .
CELL, 1991, 67 (01) :213-224
[8]   A GENETIC-LINKAGE MAP OF THE LABORATORY RAT, RATTUS-NORVEGICUS [J].
JACOB, HJ ;
BROWN, DM ;
BUNKER, RK ;
DALY, MJ ;
DZAU, VJ ;
GOODMAN, A ;
KOIKE, G ;
KREN, V ;
KURTZ, T ;
LERNMARK, A ;
LEVAN, G ;
MAO, YP ;
PETTERSSON, A ;
PRAVENEC, M ;
SIMON, JS ;
SZPIRER, C ;
SZPIRER, J ;
TROLLIET, MR ;
WINER, ES ;
LANDER, ES .
NATURE GENETICS, 1995, 9 (01) :63-69
[9]   A genetic linkage map of the rat derived from recombinant inbred strains [J].
Pravenec, M ;
Gauguier, D ;
Schott, JJ ;
Buard, J ;
Kren, V ;
Bila, V ;
Szpirer, C ;
Szpirer, J ;
Wang, JM ;
Huang, H ;
StLezin, E ;
Spence, MA ;
Flodman, P ;
Printz, M ;
Lathrop, GM ;
Vergnaud, G ;
Kurtz, TW .
MAMMALIAN GENOME, 1996, 7 (02) :117-127
[10]   Chromosomal mapping of quantitative trait loci contributing to stroke in a rat model of complex human disease [J].
Rubattu, S ;
Volpe, M ;
Kreutz, R ;
Ganten, U ;
Ganten, D ;
Lindpaintner, K .
NATURE GENETICS, 1996, 13 (04) :429-434