Regulating gene expression with light-activated oligonucleotides

被引:117
作者
Tang, XinJing [1 ]
Dmochowski, Ivan J. [1 ]
机构
[1] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
关键词
D O I
10.1039/b614349k
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Since the development of light-responsive amino acids, the activity of numerous biomolecules has been photomodulated in biochemical, biophysical, and cellular assays. Biological problems of even greater complexity motivate the development of quantitative methods for controlling gene activity with high spatial and temporal resolution, using light as an external trigger. Photoresponsive DNA and RNA oligonucleotides would optimally serve this purpose, but have proven difficult to expand from proofs-of-concept to in vivo experiments. Until recently, the development of this technology was limited by the synthesis of oligonucleotides whose function could be significantly modulated with near-UV light. New synthetic protocols and strategies for both up- and down-regulating gene activity finally make it possible to address biological considerations. In the near future, we can expect photoresponsive DNA and RNA molecules that are relatively non-toxic, nuclease-resistant, and maintain their specificity and activity in vivo. Quantitative, laser-initiated methods for controlling DNA and RNA function will illuminate new areas in cell and developmental biology.
引用
收藏
页码:100 / 110
页数:11
相关论文
共 160 条
[81]   Synergistic effect of the two azobenzenes in the promoter on the photo-regulation of transcription reaction with SP6 RNA polymerase [J].
Liu, MZ ;
Tamaru, D ;
Asanuma, H ;
Komiyama, M .
CHEMISTRY LETTERS, 2003, 32 (12) :1174-1175
[82]   Light-regulated catalysis by an RNA-cleaving deoxyribozyme [J].
Liu, Y ;
Sen, D .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 341 (04) :887-892
[83]   Release and report: A new photolabile caging system with a two-photon fluorescence reporting function [J].
Majjigapu, JRR ;
Kurchan, AN ;
Kottani, R ;
Gustafson, TP ;
Kutateladze, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (36) :12458-12459
[84]  
MAKINGS LR, 1994, J BIOL CHEM, V269, P6282
[85]   CAGED PROTEIN CONJUGATES AND LIGHT-DIRECTED GENERATION OF PROTEIN-ACTIVITY - PREPARATION, PHOTOACTIVATION, AND SPECTROSCOPIC CHARACTERIZATION OF CAGED G-ACTIN CONJUGATES [J].
MARRIOTT, G .
BIOCHEMISTRY, 1994, 33 (31) :9092-9097
[86]   4'-acylated thymidines: A new class of DNA chain terminators and photocleavable DNA building blocks [J].
Marx, A ;
MacWilliams, MP ;
Bickle, TA ;
Schwitter, U ;
Giese, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (05) :1131-1132
[87]   Photoregulation of RNA digestion by RNase H with azobenzene-tethered DNA [J].
Matsunaga, D ;
Asanuma, H ;
Komiyama, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (37) :11452-11453
[88]   Light-induced formation of G-quadruplex DNA secondary structures [J].
Mayer, G ;
Kröck, L ;
Mikat, V ;
Engeser, M ;
Heckel, A .
CHEMBIOCHEM, 2005, 6 (11) :1966-1970
[89]   Biologically active molecules with a "light switch" [J].
Mayer, Guenter ;
Heckel, Alexander .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2006, 45 (30) :4900-4921
[90]   A NEW APPROACH TO TIME-RESOLVED STUDIES OF ATP-REQUIRING BIOLOGICAL-SYSTEMS - LASER FLASH-PHOTOLYSIS OF CAGED ATP [J].
MCCRAY, JA ;
HERBETTE, L ;
KIHARA, T ;
TRENTHAM, DR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1980, 77 (12) :7237-7241