A global map of human gene expression

被引：253

作者：

Lukk, Margus ^{[1
]}

Kapushesky, Misha ^{[1
]}

Nikkila, Janne ^{[2
]}

Parkinson, Helen ^{[1
]}

Goncalves, Angela ^{[1
]}

Huber, Wolfgang ^{[1
]}

Ukkonen, Esko ^{[3
]}

Brazma, Alvis ^{[1
]}

机构：

[1] European Bioinformat Inst, Cambridge, England

[2] Univ Helsinki, Fac Vet Med, Helsinki, Finland

[3] Univ Helsinki, Dept Comp Sci, SF-00510 Helsinki, Finland

来源：

NATURE BIOTECHNOLOGY | 2010年 / 28卷 / 04期

关键词：

ATLAS; MOUSE; ARCHIVE;

D O I：

10.1038/nbt0410-322

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

引用

页码：322 / 324

页数：3

共 13 条

[1] NCBI GEO: archive for high-throughput functional genomic data [J].

Barrett, Tanya ;

Troup, Dennis B. ;

Wilhite, Stephen E. ;

Ledoux, Pierre ;

Rudnev, Dmitry ;

Evangelista, Carlos ;

Kim, Irene F. ;

Soboleva, Alexandra ;

Tomashevsky, Maxim ;

Marshall, Kimberly A. ;

Phillippy, Katherine H. ;

Sherman, Patti M. ;

Muertter, Rolf N. ;

Edgar, Ron .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D885-D890

[2] Creation and implications of a phenome-genome network [J].

Butte, AJ ;

Kohane, IS .

NATURE BIOTECHNOLOGY, 2006, 24 (01) :55-62

[3] Celsius: a community resource for Affymetrix microarray data [J].

Day, Allen ;

Carlson, Marc R. J. ;

Dong, Jun ;

O'Connor, Brian D. ;

Nelson, Stanley F. .

GENOME BIOLOGY, 2007, 8 (06)

[4] Transcriptional profiling of mouse and human ES. cells identifies SLAIN1, a novel stem cell gene [J].

Hirst, CE ;

Ng, ES ;

Azzola, L ;

Voss, AK ;

Thomas, T ;

Stanley, EG ;

Elefanty, AG .

DEVELOPMENTAL BIOLOGY, 2006, 293 (01) :90-103

[5] Gene Expression Atlas at the European Bioinformatics Institute [J].

Kapushesky, Misha ;

Emam, Ibrahim ;

Holloway, Ele ;

Kurnosov, Pavel ;

Zorin, Andrey ;

Malone, James ;

Rustici, Gabriella ;

Williams, Eleanor ;

Parkinson, Helen ;

Brazma, Alvis .

NUCLEIC ACIDS RESEARCH, 2010, 38 :D690-D698

[6] Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues [J].

Kilpinen, Sami ;

Autio, Reija ;

Ojala, Kalle ;

Iljin, Kristiina ;

Bucher, Elmar ;

Sara, Henri ;

Pisto, Tommi ;

Saarela, Matti ;

Skotheim, Rolf I. ;

Bjorkman, Mari ;

Mpindi, John-Patrick ;

Haapa-Paananen, Saija ;

Vainio, Paula ;

Edgren, Henrik ;

Wolf, Maija ;

Astola, Jaakko ;

Nees, Matthias ;

Hautaniemi, Sampsa ;

Kallioniemi, Olli .

GENOME BIOLOGY, 2008, 9 (09) :R139

[7] Modeling sample variables with an Experimental Factor Ontology [J].

Malone, James ;

Holloway, Ele ;

Adamusiak, Tomasz ;

Kapushesky, Misha ;

Zheng, Jie ;

Kolesnikov, Nikolay ;

Zhukova, Anna ;

Brazma, Alvis ;

Parkinson, Helen .

BIOINFORMATICS, 2010, 26 (08) :1112-1118

[8] Dynamism in gene expression across multiple studies [J].

Morgan, Alexander A. ;

Dudley, Joel T. ;

Deshpande, Tarangini ;

Butte, Atul J. .

PHYSIOLOGICAL GENOMICS, 2010, 40 (03) :128-140

[9] ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression [J].

Parkinson, Helen ;

Kapushesky, Misha ;

Kolesnikov, Nikolay ;

Rustici, Gabriella ;

Shojatalab, Mohammad ;

Abeygunawardena, Niran ;

Berube, Hugo ;

Dylag, Miroslaw ;

Emam, Ibrahim ;

Farne, Anna ;

Holloway, Ele ;

Lukk, Margus ;

Malone, James ;

Mani, Roby ;

Pilicheva, Ekaterina ;

Rayner, Tim F. ;

Rezwan, Faisal ;

Sharma, Anjan ;

Williams, Eleanor ;

Bradley, Xiangqun Zheng ;

Adamusiak, Tomasz ;

Brandizi, Marco ;

Burdett, Tony ;

Coulson, Richard ;

Krestyaninova, Maria ;

Kurnosov, Pavel ;

Maguire, Eamonn ;

Neogi, Sudeshna Guha ;

Rocca-Serra, Philippe ;

Sansone, Susanna-Assunta ;

Sklyar, Nataliya ;

Zhao, Mengyao ;

Sarkans, Ugis ;

Brazma, Alvis .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D868-D872

[10] The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements [J].

Shi, Leming ;

Reid, Laura H. ;

Jones, Wendell D. ;

Shippy, Richard ;

Warrington, Janet A. ;

Baker, Shawn C. ;

Collins, Patrick J. ;

de Longueville, Francoise ;

Kawasaki, Ernest S. ;

Lee, Kathleen Y. ;

Luo, Yuling ;

Sun, Yongming Andrew ;

Willey, James C. ;

Setterquist, Robert A. ;

Fischer, Gavin M. ;

Tong, Weida ;

Dragan, Yvonne P. ;

Dix, David J. ;

Frueh, Felix W. ;

Goodsaid, Federico M. ;

Herman, Damir ;

Jensen, Roderick V. ;

Johnson, Charles D. ;

Lobenhofer, Edward K. ;

Puri, Raj K. ;

Scherf, Uwe ;

Thierry-Mieg, Jean ;

Wang, Charles ;

Wilson, Mike ;

Wolber, Paul K. ;

Zhang, Lu ;

Amur, Shashi ;

Bao, Wenjun ;

Barbacioru, Catalin C. ;

Lucas, Anne Bergstrom ;

Bertholet, Vincent ;

Boysen, Cecilie ;

Bromley, Bud ;

Brown, Donna ;

Brunner, Alan ;

Canales, Roger ;

Cao, Xiaoxi Megan ;

Cebula, Thomas A. ;

Chen, James J. ;

Cheng, Jing ;

Chu, Tzu-Ming ;

Chudin, Eugene ;

Corson, John ;

Corton, J. Christopher ;

Croner, Lisa J. .

NATURE BIOTECHNOLOGY, 2006, 24 (09) :1151-1161

← 1 2 →