Human telomeric G-quadruplex: thermodynamic and kinetic studies of telomeric quadruplex stability

被引:116
作者
Chaires, Jonathan B. [1 ]
机构
[1] Univ Louisville, James Graham Brown Canc Ctr, Louisville, KY 40202 USA
关键词
enthalpy; free energy; kinetics; quadruplex DNA; thermodynamics; entropy; calorimetry; folding; spectroscopy; allostery; SINGULAR-VALUE DECOMPOSITION; NUCLEIC-ACIDS; CONFORMATIONAL TRANSITIONS; HEAT-CAPACITY; ORDER DNA; SEQUENCE; BINDING; REPEAT; MODELS; CANCER;
D O I
10.1111/j.1742-4658.2009.07462.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Thermodynamic and kinetic studies complement high-resolution structures of G-quadruplexes. Such studies are essential for a thorough understanding of the mechanisms that govern quadruplex folding and conformational changes in quadruplexes. This perspective article reviews representative thermodynamic and kinetic studies of the folding of human telomeric quadruplex structures. Published thermodynamic data vary widely and are inconsistent; possible reasons for these inconsistencies are discussed. The key issue of whether such folding reactions are a simple two-state process is examined. A tentative energy balance for the folding of telomeric quadruplexes in Na+ and K+ solution, and for the conformational transition between these forms is presented.
引用
收藏
页码:1098 / 1106
页数:9
相关论文
共 78 条
[51]   G-quadruplex structures of human telomere DNA examined by single molecule FRET and BrG-substitution [J].
Okamoto, Kenji ;
Sannohe, Yuta ;
Mashimo, Tomoko ;
Sugiyama, Hiroshi ;
Terazima, Masahide .
BIOORGANIC & MEDICINAL CHEMISTRY, 2008, 16 (14) :6873-6879
[52]   Unfolding of G-quadruplexes: Energetic, and ion and water contributions of G-quartet stacking [J].
Olsen, CM ;
Gmeiner, WH ;
Marky, LA .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (13) :6962-6969
[53]   Crystal structure of parallel quadruplexes from human telomeric DNA [J].
Parkinson, GN ;
Lee, MPH ;
Neidle, S .
NATURE, 2002, 417 (6891) :876-880
[54]   Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics [J].
Patel, Dinshaw J. ;
Phan, Anh Tuan ;
Kuryavyi, Vitaly .
NUCLEIC ACIDS RESEARCH, 2007, 35 (22) :7429-7455
[55]   Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution [J].
Phan, Anh Tuan ;
Kuryavyi, Vitaly ;
Luu, Kim Ngoc ;
Patel, Dinshaw J. .
NUCLEIC ACIDS RESEARCH, 2007, 35 (19) :6517-6525
[56]   Human telomeric G-quadruplex: structures of DNA and RNA sequences [J].
Phan, Anh Tuan .
FEBS JOURNAL, 2010, 277 (05) :1107-1117
[57]  
Plum G.E., 2000, Current Protocols in Nucleic Acid Chemistry, p7.3.1
[58]   Heat capacity in proteins [J].
Prabhu, NV ;
Sharp, KA .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2005, 56 :521-548
[59]   Pressure denaturation of proteins: Evaluation of compressibility effects [J].
Prehoda, KE ;
Mooberry, ES ;
Markley, JL .
BIOCHEMISTRY, 1998, 37 (17) :5785-5790
[60]  
PUGLISI JD, 1989, METHOD ENZYMOL, V180, P304