The ins and outs of ATP-dependent chromatin remodeling in budding yeast: Biophysical and proteomic perspectives

被引:37
作者
van Vugt, Joke J. F. A.
Ranes, Michael
Campsteijn, Coen
Logie, Colin
机构
[1] Radboud Univ Nijmegen, NCMLS, Dept Biol Mol, NL-6500 HB Nijmegen, Netherlands
[2] Sars Int Ctr Marine Mol Biol, N-5008 Bergen, Norway
来源
BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION | 2007年 / 1769卷 / 03期
关键词
nucleosome; chromatin SNF2; STH1; ISW1; ISW2; INO80; SWR1; CHD1; YFR038w;
D O I
10.1016/j.bbaexp.2007.01.013
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
ATP-dependent chromatin remodeling is performed by multi-subunit protein complexes. Over the last years, the identity of these factors has been unveiled in yeast and many parallels have been drawn with animal and plant systems, indicating that sophisticated chromatin transactions evolved prior to their divergence. Here we review current knowledge pertaining to the molecular mode of action of ATP-dependent chromatin remodeling, from single molecule studies to genome-wide genetic and proteomic studies. We focus on the budding yeast versions of SWI/SNF, RSC, DDMI, ISWI, CHD1, INO80 and SWR1. (c) 2007 Elsevier B.V. All rights reserved.
引用
收藏
页码:153 / 171
页数:19
相关论文
共 223 条
[1]   A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control [J].
Angus-Hill, ML ;
Schlichter, A ;
Roberts, D ;
Erdjument-Bromage, H ;
Tempst, P ;
Cairns, BR .
MOLECULAR CELL, 2001, 7 (04) :741-751
[2]   Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA [J].
Auble, DT ;
Wang, DY ;
Post, KW ;
Hahn, S .
MOLECULAR AND CELLULAR BIOLOGY, 1997, 17 (08) :4842-4851
[3]   The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion [J].
Baetz, KK ;
Krogan, NJ ;
Emili, A ;
Greenblatt, J ;
Hieter, P .
MOLECULAR AND CELLULAR BIOLOGY, 2004, 24 (03) :1232-1244
[4]   In silico characterization of the INO80 subfamily of SWI2/SNF2 chromatin remodeling proteins [J].
Bakshi, R ;
Prakash, T ;
Dash, D ;
Brahmachari, V .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2004, 320 (01) :197-204
[5]   Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain [J].
Bannister, AJ ;
Zegerman, P ;
Partridge, JF ;
Miska, EA ;
Thomas, JO ;
Allshire, RC ;
Kouzarides, T .
NATURE, 2001, 410 (6824) :120-124
[6]   AFM imaging of protein movements: Histone H2A-H2B release during nucleosome remodeling [J].
Bash, R. ;
Wang, H. ;
Anderson, C. ;
Yodh, J. ;
Hager, G. ;
Lindsay, S. M. ;
Lohr, D. .
FEBS LETTERS, 2006, 580 (19) :4757-4761
[7]   Pontin52 and Reptin52 function as antagonistic regulators of β-catenin signalling activity [J].
Bauer, A ;
Chauvet, S ;
Huber, O ;
Usseglio, F ;
Rothbächer, U ;
Aragnol, D ;
Kemler, R ;
Pradel, J .
EMBO JOURNAL, 2000, 19 (22) :6121-6130
[8]  
Bazett-Jones DP, 1999, MOL CELL BIOL, V19, P1470
[9]   HMG proteins: dynamic players in gene regulation and differentiation [J].
Bianchi, ME ;
Agresti, A .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2005, 15 (05) :496-506
[10]   The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing [J].
Blank, TA ;
Becker, PB .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (01) :1-8