The complete mitochondrial genome of the yeast Kluyveromyces thermotolerans

被引:29
作者
Talla, E
Anthouard, V
Bouchier, C
Frangeul, L
Dujon, B
机构
[1] Univ Paris 06, Inst Pasteur, CNRS,Unite Genet Mol Levures, URA 2171,UFR 927, F-75724 Paris 15, France
[2] CNRS, UMR 8030, F-91057 Evry, France
[3] Pasteur Genopole Ile France, Plate Forme Genom, F-75724 Paris 15, France
[4] Pasteur Genopole Ile France, Plateforme Integrat & Anal Genom, F-75724 Paris 15, France
关键词
tRNA; codon usage; genetic code; intronic ORF;
D O I
10.1016/j.febslet.2004.10.106
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We report here the complete nucleotide sequence of the 23.5-kb mitochondrial genome from the yeast Kluyveromyces thermotolerans. It encodes, all on the same DNA strand, three subunits of cytochrome oxidase (COX1, COX2 and COX3), three subunits of ATP synthetase (ATP6, ATP8 and ATP9), the apocytochrome b (COB), the ribosomal protein VAR1, 24 tRNAs, the small and large ribosomal RNAs, and the RNA subunit of RNase P. Three intronic ORFs are present within the COX1 gene group I introns. The K. thermotolerans mitochondrial genome is very similar to the Candida glabrata mitochondrial genome, as judged from clusters of gene order, gene transcription units and sequence similarities. Interestingly, the predicted secondary structure of the abnormal tRNA(Thr1) contains 10 nucleotides in its anticodon loop. This sequence is available under EMBL Accession No. AJ634268. (C) 2004 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:30 / 40
页数:11
相关论文
共 35 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   Infrequent genetic exchange and recombination in the mitochondrial genome of Candida albicans [J].
Anderson, JB ;
Wickens, C ;
Khan, M ;
Cowen, LE ;
Federspiel, N ;
Jones, T ;
Kohn, LM .
JOURNAL OF BACTERIOLOGY, 2001, 183 (03) :865-872
[3]   Genomic exploration of the hemiascomycetous yeasts: 2. Data generation and processing [J].
Artiguenave, F ;
Wincker, P ;
Brottier, P ;
Duprat, S ;
Jovelin, F ;
Scarpelli, C ;
Verdier, J ;
Vico, V ;
Weissenbach, J ;
Saurin, W .
FEBS LETTERS, 2000, 487 (01) :13-16
[4]   Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome-c oxidase II gene [J].
Belloch, C ;
Querol, A ;
García, MD ;
Barrio, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :405-416
[5]   Usage of non-canonical promoter sequence by the yeast mitochondrial RNA polymerase [J].
Biswas, TK .
GENE, 1998, 212 (02) :305-314
[6]   Genomic Exploration of the Hemiascomycetous Yeasts:: 13.: Pichia angusta [J].
Blandin, G ;
Llorente, B ;
Malpertuy, A ;
Wincker, P ;
Artiguenave, F ;
Dujon, B .
FEBS LETTERS, 2000, 487 (01) :76-81
[7]   A comparison of three fission yeast mitochondrial genomes [J].
Bullerwell, CE ;
Leigh, J ;
Forget, L ;
Lang, BF .
NUCLEIC ACIDS RESEARCH, 2003, 31 (02) :759-768
[8]   Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility [J].
Chevalier, BS ;
Stoddard, BL .
NUCLEIC ACIDS RESEARCH, 2001, 29 (18) :3757-3774
[9]   LOCATION OF TRANSCRIPTIONAL CONTROL SIGNALS AND TRANSFER-RNA SEQUENCES IN TORULOPSIS-GLABRATA MITOCHONDRIAL-DNA [J].
CLARKWALKER, GD ;
MCARTHUR, CR ;
SRIPRAKASH, KS .
EMBO JOURNAL, 1985, 4 (02) :465-473
[10]  
CLARKWALKER GD, 1994, J MOL EVOL, V38, P593