Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks

被引:404
作者
De Las Rivas, Javier [1 ]
Fontanillo, Celia [1 ]
机构
[1] USAL, Bioinformat & Funct Genom Res Grp, Canc Res Ctr, CiC IBMCC,CSIC, Salamanca, Spain
关键词
INTERACTION DATABASE; CYTOSCAPE; UNIPROT; KEGG;
D O I
10.1371/journal.pcbi.1000807
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:1 / 8
页数:8
相关论文
共 34 条
[1]   The Universal Protein Resource (UniProt) in 2010 [J].
Apweiler, Rolf ;
Martin, Maria Jesus ;
O'Donovan, Claire ;
Magrane, Michele ;
Alam-Faruque, Yasmin ;
Antunes, Ricardo ;
Barrell, Daniel ;
Bely, Benoit ;
Bingley, Mark ;
Binns, David ;
Bower, Lawrence ;
Browne, Paul ;
Chan, Wei Mun ;
Dimmer, Emily ;
Eberhardt, Ruth ;
Fedotov, Alexander ;
Foulger, Rebecca ;
Garavelli, John ;
Huntley, Rachael ;
Jacobsen, Julius ;
Kleen, Michael ;
Laiho, Kati ;
Leinonen, Rasko ;
Legge, Duncan ;
Lin, Quan ;
Liu, Wudong ;
Luo, Jie ;
Orchard, Sandra ;
Patient, Samuel ;
Poggioli, Diego ;
Pruess, Manuela ;
Corbett, Matt ;
di Martino, Giuseppe ;
Donnelly, Mike ;
van Rensburg, Pieter ;
Bairoch, Amos ;
Bougueleret, Lydie ;
Xenarios, Ioannis ;
Altairac, Severine ;
Auchincloss, Andrea ;
Argoud-Puy, Ghislaine ;
Axelsen, Kristian ;
Baratin, Delphine ;
Blatter, Marie-Claude ;
Boeckmann, Brigitte ;
Bolleman, Jerven ;
Bollondi, Laurent ;
Boutet, Emmanuel ;
Quintaje, Silvia Braconi ;
Breuza, Lionel .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D142-D148
[2]   The IntAct molecular interaction database in 2010 [J].
Aranda, B. ;
Achuthan, P. ;
Alam-Faruque, Y. ;
Armean, I. ;
Bridge, A. ;
Derow, C. ;
Feuermann, M. ;
Ghanbarian, A. T. ;
Kerrien, S. ;
Khadake, J. ;
Kerssemakers, J. ;
Leroy, C. ;
Menden, M. ;
Michaut, M. ;
Montecchi-Palazzi, L. ;
Neuhauser, S. N. ;
Orchard, S. ;
Perreau, V. ;
Roechert, B. ;
van Eijk, K. ;
Hermjakob, H. .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D525-D531
[3]   Methods for the detection and analysis of protein-protein interactions [J].
Berggard, Tord ;
Linse, Sara ;
James, Peter .
PROTEOMICS, 2007, 7 (16) :2833-2842
[4]   Untangling the protein web [J].
Blow, Nathan .
NATURE, 2009, 460 (7253) :415-418
[5]   Tissue specificity and the human protein interaction network [J].
Bossi, Alice ;
Lehner, Ben .
MOLECULAR SYSTEMS BIOLOGY, 2009, 5
[6]   The BioGRID interaction database:: 2008 update [J].
Breitkreutz, Bobby-Joe ;
Stark, Chris ;
Reguly, Teresa ;
Boucher, Lorrie ;
Breitkreutz, Ashton ;
Livstone, Michael ;
Oughtred, Rose ;
Lackner, Daniel H. ;
Bahler, Jurg ;
Wood, Valerie ;
Dolinski, Kara ;
Tyers, Mike .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D637-D640
[7]   MINT, the molecular interaction database: 2009 update [J].
Ceol, Arnaud ;
Aryamontri, Andrew Chatr ;
Licata, Luana ;
Peluso, Daniele ;
Briganti, Leonardo ;
Perfetto, Livia ;
Castagnoli, Luisa ;
Cesareni, Gianni .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D532-D539
[8]   Protein interactions: integration leads to belief [J].
Chatr-aryamontri, Andrew ;
Ceol, Arnaud ;
Licata, Luana ;
Cesareni, Gianni .
TRENDS IN BIOCHEMICAL SCIENCES, 2008, 33 (06) :241-242
[9]   Interactome: gateway into systems biology [J].
Cusick, ME ;
Klitgord, N ;
Vidal, M ;
Hill, DE .
HUMAN MOLECULAR GENETICS, 2005, 14 :R171-R181
[10]  
Cusick ME, 2009, NAT METHODS, V6, P39, DOI [10.1038/NMETH.1284, 10.1038/nmeth.1284]