The Paf1 complex: Platform or player in RNA polymerase II transcription?

被引:203
作者
Jaehning, Judith A. [1 ,2 ]
机构
[1] Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Aurora, CO 80045 USA
[2] Univ Colorado, Sch Med, Program Mol Biol, Aurora, CO 80045 USA
来源
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS | 2010年 / 1799卷 / 5-6期
关键词
RNA polymerase II; Paf1; complex; Transcription elongation; Transcription termination; Histone modification; RNA 3 ' end formation; COTRANSCRIPTIONAL HISTONE MODIFICATION; TUMOR-SUPPRESSOR PROTEIN; CARBOXY-TERMINAL DOMAIN; SACCHAROMYCES-CEREVISIAE; H2B UBIQUITYLATION; ELONGATION-FACTORS; GENE-EXPRESSION; IN-VIVO; BINDING PROTEIN; PROCESSING FACTORS;
D O I
10.1016/j.bbagrm.2010.01.001
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Paf1 complex (Paf1C), composed of the proteins Paf1, Ctr9, Cdc73, Rtf1, and Leo1, accompanies RNA polymerase II (pol II) from the promoter to the 3' end formation site of mRNA and snoRNA encoding genes; it is also found associated with RNA polymerase I (pol I) on rDNA. The Paf1C is found in simple and complex eukaryotes; in human cells hSki8 is also part of the complex. The Paf1C has been linked to a large and growing list of transcription related processes including: communication with transcriptional activators; recruitment and activation of histone modification factors; facilitation of elongation on chromatin templates; and the recruitment of 3' end-processing factors necessary for accurate termination of transcription. Absence of, or mutations in, Paf1C factors result in alterations in gene expression that can result in misregulation of developmental programs and loss of control of cell division leading to cancer in humans. This review considers recent information that may help to resolve whether the Paf1C is primarily a "platform" on pol II that coordinates the association of many critical transcription factors, or if the complex itself plays a more direct role in one or more steps in transcription. (C) 2010 Elsevier B.V. All rights reserved.
引用
收藏
页码:379 / 388
页数:10
相关论文
共 114 条
[91]   Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex [J].
Tan-Wong, Sue Mei ;
Wijayatilake, Hashanthi D. ;
Proudfoot, Nick J. .
GENES & DEVELOPMENT, 2009, 23 (22) :2610-2624
[92]   An in vivo map of the yeast protein interactome [J].
Tarassov, Kirill ;
Messier, Vincent ;
Landry, Christian R. ;
Radinovic, Stevo ;
Molina, Mercedes M. Serna ;
Shames, Igor ;
Malitskaya, Yelena ;
Vogel, Jackie ;
Bussey, Howard ;
Michnick, Stephen W. .
SCIENCE, 2008, 320 (5882) :1465-1470
[93]   Drosophila Rtf1 functions in histone methylation, gene expression, and Notch signaling [J].
Tenney, Kristen ;
Gerber, Mark ;
Ilvarsonn, Anne ;
Schneider, Jessica ;
Gause, Maria ;
Dorsettt, Dale ;
Eissenberg, Joel C. ;
Shilatifard, Ali .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (32) :11970-11974
[94]   A novel collection of accessory factors associated with yeast RNA polymerase II [J].
Wade, PA ;
Werel, W ;
Fentzke, RC ;
Thompson, NE ;
Leykam, JF ;
Burgess, RR ;
Jaehning, JA ;
Burton, ZF .
PROTEIN EXPRESSION AND PURIFICATION, 1996, 8 (01) :85-90
[95]   Parafibromin, a component of the human PAF complex, regulates growth factors and is required for embryonic development and survival in adult mice [J].
Wang, Pengfei ;
Bowl, Michael R. ;
Bender, Stephanie ;
Peng, Jun ;
Farber, Leslie ;
Chen, Jindong ;
Ali, Asif ;
Zhang, ZhongFa ;
Alberts, Arthur S. ;
Thakker, Rajesh V. ;
Shilatifard, Ali ;
Williams, Bart O. ;
Teh, Bin Tean .
MOLECULAR AND CELLULAR BIOLOGY, 2008, 28 (09) :2930-2940
[96]   Characterization of human epigenomes [J].
Wang, Zhibin ;
Schones, Dustin E. ;
Zhao, Keji .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2009, 19 (02) :127-134
[97]   Rtf1 is a multifunctional component of the paf1 complex that regulates gene expression by directing cotranscriptional histone modification [J].
Warner, Marcie H. ;
Roinick, Kelli L. ;
Arndt, Karen M. .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (17) :6103-6115
[98]   RLR1 (THO2), required for expressing lacZ fusions in yeast, is conserved from yeast to humans and is a suppressor of SIN4 [J].
West, RW ;
Kruger, B ;
Thomas, S ;
Ma, JL ;
Milgrom, E .
GENE, 2000, 243 (1-2) :195-205
[99]   DEAD-box RNA helicase Sub2 is required for expression of lacZ fusions in Saccharomyces cerevisiae and is a dosage-dependent suppressor of RLR1 (THO2) [J].
West, RW ;
Milgrom, E .
GENE, 2002, 288 (1-2) :19-27
[100]   A Genetic Interaction Map of RNA-Processing Factors Reveals Links between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing [J].
Wilmes, Gwendolyn M. ;
Bergkessel, Megan ;
Bandyopadhyay, Sourav ;
Shales, Michael ;
Braberg, Hannes ;
Cagney, Gerard ;
Collins, Sean R. ;
Whitworth, Gregg B. ;
Kress, Tracy L. ;
Weissman, Jonathan S. ;
Ideker, Trey ;
Guthrie, Christine ;
Krogan, Nevan J. .
MOLECULAR CELL, 2008, 32 (05) :735-746