Mechanisms of ATP dependent chromatin remodeling

被引:108
作者
Gangaraju, Vamsi K. [1 ]
Bartholomew, Blaine [1 ]
机构
[1] So Illinois Univ, Sch Med, Dept Biochem & Mol Biol, Carbondale, IL 62901 USA
关键词
chromatin remodeling; nucleosome; SWI/SNF; ISWI; CHD; INO80; SWR1; twist diffusion; bulge propagation; nucleosome spacing;
D O I
10.1016/j.mrfmmm.2006.08.015
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The inter-relationship between DNA repair and ATP dependent chromatin remodeling has begun to become very apparent with recent discoveries. ATP dependent remodeling complexes mobilize nucleosomes along DNA, promote the exchange of histones, or completely displace nucleosomes from DNA. These remodeling complexes are often categorized based on the domain organization of their catalytic subunit. The biochemical properties and structural information of several of these remodeling complexes are reviewed. The different models for how these complexes are able to mobilize nucleosomes and alter nucleosome structure are presented incorporating several recent findings. Finally the role of histone tails and their respective modifications in ATP-dependent remodeling are discussed. (C) 2007 Elsevier B.V. All rights reserved.
引用
收藏
页码:3 / 17
页数:15
相关论文
共 151 条
[41]   Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: Analyses using recombinant yeast histones and immobilized templates [J].
Gelbart, ME ;
Rechsteiner, T ;
Richmond, TJ ;
Tsukiyama, T .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (06) :2098-2106
[42]   Roles of SWI/SNF and HATs throughout the dynamic transcription of a yeast glucose-repressible gene [J].
Geng, FQ ;
Laurent, BC .
EMBO JOURNAL, 2004, 23 (01) :127-137
[43]   Role of histone tails in nucleosome remodeling by Drosophila NURF [J].
Georgel, PT ;
Tsukiyama, T ;
Wu, C .
EMBO JOURNAL, 1997, 16 (15) :4717-4726
[44]   Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast [J].
Graumann, J ;
Dunipace, LA ;
Seol, JH ;
McDonald, WH ;
Yates, JR ;
Wold, BJ ;
Deshaies, RJ .
MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (03) :226-237
[45]  
Gregory SL, 1996, MOL CELL BIOL, V16, P792
[46]   Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI [J].
Grüne, T ;
Brzeski, J ;
Eberharter, A ;
Clapier, CR ;
Corona, DFV ;
Becker, PB ;
Müller, CW .
MOLECULAR CELL, 2003, 12 (02) :449-460
[47]   The SMRT and N-CoR corepressors are activating cofactors for histone deacetylase 3 [J].
Guenther, MG ;
Barak, O ;
Lazar, MA .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (18) :6091-6101
[48]   Multiple ISWI ATPase complexes from Xenopus laevis -: Functional conservation of an ACF/CHRAC homolog [J].
Guschin, D ;
Geiman, TM ;
Kikyo, N ;
Tremethick, DJ ;
Wolffe, AP ;
Wade, PA .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (45) :35248-35255
[49]   ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF [J].
Hamiche, A ;
Sandaltzopoulos, R ;
Gdula, DA ;
Wu, C .
CELL, 1999, 97 (07) :833-842
[50]   Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF [J].
Hamiche, A ;
Kang, JG ;
Dennis, C ;
Xiao, H ;
Wu, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (25) :14316-14321