Characteristics of solid-state nanometre pores fabricated using a transmission electron microscope

被引:152
作者
Kim, Min Jun [1 ]
McNally, Ben
Murata, Kazuyoshi
Meller, Amit
机构
[1] Drexel Univ, Philadelphia, PA 19104 USA
[2] Harvard Univ, Rowland Inst, Cambridge, MA 02142 USA
[3] Boston Univ, Boston, MA 02215 USA
[4] MIT, WI MIT Bioimaging Ctr, Cambridge, MA 02142 USA
关键词
D O I
10.1088/0957-4484/18/20/205302
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Solid-state nanopores can be used to detect nucleic acid structures at the single molecule level. An e-beam has been used to fabricate nanopores in silicon nitride and silicon dioxide membranes, but the pore formation kinetics, and hence its final structure, remain poorly understood. With the aid of high-resolution TEM imaging as well as TEM tomography we examine the effect of Si3N4 material properties on the nanopore structure. In particular, we study the dependence of membrane thickness on the nanopore contraction rate for different initial pore sizes. We explain nanopore formation kinetics as a balance of two opposite processes: ( a) material sputtering and ( b) surface-tension-induced shrinking.
引用
收藏
页数:5
相关论文
共 24 条
[1]   Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules [J].
Akeson, M ;
Branton, D ;
Kasianowicz, JJ ;
Brandin, E ;
Deamer, DW .
BIOPHYSICAL JOURNAL, 1999, 77 (06) :3227-3233
[2]   Dynamics of DNA molecules in a membrane channel probed by active control techniques [J].
Bates, M ;
Burns, M ;
Meller, A .
BIOPHYSICAL JOURNAL, 2003, 84 (04) :2366-2372
[3]   Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores [J].
Chen, P ;
Mitsui, T ;
Farmer, DB ;
Golovchenko, J ;
Gordon, RG ;
Branton, D .
NANO LETTERS, 2004, 4 (07) :1333-1337
[4]   Sizing DNA using a nanometer-diameter pore [J].
Heng, JB ;
Ho, C ;
Kim, T ;
Timp, R ;
Aksimentiev, A ;
Grinkova, YV ;
Sligar, S ;
Schulten, K ;
Timp, G .
BIOPHYSICAL JOURNAL, 2004, 87 (04) :2905-2911
[5]   Single-molecule analysis of DNA-protein complexes using nanopores [J].
Hornblower, Breton ;
Coombs, Amy ;
Whitaker, Richard D. ;
Kolomeisky, Anatoly ;
Picone, Stephen J. ;
Meller, Amit ;
Akeson, Mark .
NATURE METHODS, 2007, 4 (04) :315-317
[6]   Characterization of individual polynucleotide molecules using a membrane channel [J].
Kasianowicz, JJ ;
Brandin, E ;
Branton, D ;
Deamer, DW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (24) :13770-13773
[7]   Rapid fabrication of uniformly sized nanopores and nanopore arrays for parallel DNA analysis [J].
Kim, Min Jun ;
Wanunu, Meni ;
Bell, David C. ;
Meller, Amit .
ADVANCED MATERIALS, 2006, 18 (23) :3149-+
[8]   Fabrication and characterization of nanopore-based electrodes with radii down to 2 nm [J].
Krapf, D ;
Wu, MY ;
Smeets, RMM ;
Zandbergen, HW ;
Dekker, C ;
Lemay, SG .
NANO LETTERS, 2006, 6 (01) :105-109
[9]   Computer visualization of three-dimensional image data using IMOD [J].
Kremer, JR ;
Mastronarde, DN ;
McIntosh, JR .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :71-76
[10]   Ion-beam sculpting at nanometre length scales [J].
Li, J ;
Stein, D ;
McMullan, C ;
Branton, D ;
Aziz, MJ ;
Golovchenko, JA .
NATURE, 2001, 412 (6843) :166-169