Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume

被引:100
作者
Dick, Gregory J. [1 ,2 ]
Tebo, Bradley M. [1 ,2 ]
机构
[1] Univ Calif San Diego, Div Marine Biol Res, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Scripps Inst Oceanog, Ctr Marine Biotechnol & Biomed, La Jolla, CA 92093 USA
关键词
SP-NOV; PHYLOGENETIC CHARACTERIZATION; MOLECULAR CHARACTERIZATION; BACTERIAL ENDOSYMBIONTS; EPSILON-PROTEOBACTERIA; AMMONIA OXIDATION; MN(II) OXIDATION; VENT; COMMUNITY; SEDIMENTS;
D O I
10.1111/j.1462-2920.2010.02177.x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
P>Hydrothermal plumes are hot spots of microbial biogeochemistry in the deep ocean, yet little is known about the diversity or ecology of microorganisms inhabiting plumes. Recent biogeochemical evidence shows that Mn(II) oxidation in the Guaymas Basin (GB) hydrothermal plume is microbially mediated and suggests that the plume microbial community is distinct from deep-sea communities. Here we use a molecular approach to compare microbial diversity in the GB plume and in background deep seawater communities, and cultivation to identify Mn(II)-oxidizing bacteria from plumes and sediments. Despite dramatic differences in Mn(II) oxidation rates between plumes and background seawater, microbial diversity and membership were remarkably similar. All bacterial clone libraries were dominated by Gammaproteobacteria and archaeal clone libraries were dominated by Crenarchaeota. Two lineages, both phylogenetically related to methanotrophs and/or methylotrophs, were consistently over-represented in the plume. Eight Mn(II)-oxidizing bacteria were isolated, but none of these or previously identified Mn(II) oxidizers were abundant in clone libraries. Taken together with Mn(II) oxidation rates measured in laboratory cultures and in the field, these results suggest that Mn(II) oxidation in the GB hydrothermal plume is mediated by genome-level dynamics (gene content and/or expression) of microorganisms that are indigenous and abundant in the deep sea but have yet to be unidentified as Mn(II) oxidizers.
引用
收藏
页码:1334 / 1347
页数:14
相关论文
共 89 条
[1]   PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample [J].
Acinas, SG ;
Sarma-Rupavtarm, R ;
Klepac-Ceraj, V ;
Polz, MF .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (12) :8966-8969
[2]   New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras [J].
Ashelford, Kevin E. ;
Chuzhanova, Nadia A. ;
Fry, John C. ;
Jones, Antonia J. ;
Weightman, Andrew J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :5734-5741
[3]   Lineages of acidophilic archaea revealed by community genomic analysis [J].
Baker, Brett J. ;
Tyson, Gene W. ;
Webb, Richard I. ;
Flanagan, Judith ;
Hugenholtz, Philip ;
Allen, Eric E. ;
Banfield, Jillian F. .
SCIENCE, 2006, 314 (5807) :1933-1935
[4]  
Baker E.T., 1995, GEOPHYSICAL MONOGRAPH-AM ERICAN GEOPHYSICAL UNION, V91, P47, DOI DOI 10.1029/GM091P0047
[5]   Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean [J].
Bano, N ;
Hollibaugh, JT .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002, 68 (02) :505-518
[6]   Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses [J].
Bhaya, Devaki ;
Grossman, Arthur R. ;
Steunou, Anne-Soisig ;
Khuri, Natalia ;
Cohan, Frederick M. ;
Hamamura, Natsuko ;
Melendrez, Melanie C. ;
Bateson, Mary M. ;
Ward, David M. ;
Heidelberg, John F. .
ISME JOURNAL, 2007, 1 (08) :703-713
[7]   Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem [J].
Brazelton, William J. ;
Schrenk, Matthew O. ;
Kelley, Deborah S. ;
Baross, John A. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :6257-6270
[8]   MANGANESE GEOCHEMISTRY IN THE GUAYMAS BASIN, GULF OF CALIFORNIA [J].
CAMPBELL, AC ;
GIESKES, JM ;
LUPTON, JE ;
LONSDALE, PF .
GEOCHIMICA ET COSMOCHIMICA ACTA, 1988, 52 (02) :345-357
[9]   The versatile ε-proteobacteria:: key players in sulphidic habitats [J].
Campbell, Barbara J. ;
Engel, Annette Summers ;
Porter, Megan L. ;
Takai, Ken .
NATURE REVIEWS MICROBIOLOGY, 2006, 4 (06) :458-468
[10]   Implications of carbon flux from the Cascadia accretionary prism: results from long-term, in situ measurements at ODP Site 892B [J].
Carson, B ;
Kastner, M ;
Bartlett, D ;
Jaeger, J ;
Jannasch, H ;
Weinstein, Y .
MARINE GEOLOGY, 2003, 198 (1-2) :159-180