Evolutionary and biomedical insights from the rhesus macaque genome

被引:1022
作者
Gibbs, Richard A. [1 ]
Rogers, Jeffrey
Katze, Michael G.
Bumgarner, Roger
Weinstock, George M.
Mardis, Elaine R.
Remington, Karin A.
Strausberg, Robert L.
Venter, J. Craig
Wilson, Richard K.
Batzer, Mark A.
Bustamante, Carlos D.
Eichler, Evan E.
Hahn, Matthew W.
Hardison, Ross C.
Makova, Kateryna D.
Miller, Webb
Milosavljevic, Aleksandar
Palermo, Robert E.
Siepel, Adam
Sikela, James M.
Attaway, Tony
Bell, Stephanie
Bernard, Kelly E.
Buhay, Christian J.
Chandrabose, Mimi N.
Dao, Marvin
Davis, Clay
Delehaunty, Kimberly D.
Ding, Yan
Dinh, Huyen H.
Dugan-Rocha, Shannon
Fulton, Lucinda A.
Gabisi, Ramatu Ayiesha
Garner, Toni T.
Godfrey, Jennifer
Hawes, Alicia C.
Hernandez, Judith
Hines, Sandra
Holder, Michael
Hume, Jennifer
Jhangiani, Shalini N.
Joshi, Vandita
Khan, Ziad Mohid
Kirkness, Ewen F.
Cree, Andrew
Fowler, R. Gerald
Lee, Sandra
Lewis, Lora R.
Li, Zhangwan
机构
[1] Baylor Coll Med, Human Genome Sequencing Ctr, Houston, TX 77030 USA
[2] Baylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA
[3] SW Fdn Biomed Res, Dept Genet, San Antonio, TX 78227 USA
[4] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA
[5] Washington Univ, Genome Sequencing Ctr, St Louis, MO 63108 USA
[6] J Craig Veriter Inst, Rockville, MD 20850 USA
[7] Louisiana State Univ, Ctr Biomodular Multiscale Syst, Dept Biol Sci, Biol Computat & Visualizat Ctr, Baton Rouge, LA 70803 USA
[8] Cornell Univ, Dept Biol Stat & Computat Biol, Ithaca, NY 14853 USA
[9] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[10] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
[11] Indiana Univ, Sch Informat, Bloomington, IN 47405 USA
[12] Penn State Univ, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA
[13] Univ Colorado, Dept Pharmacol, Human Med Genet Program, Denver, CO USA
[14] Univ Colorado, Dept Pharmacol, Program Neurosci, Denver, CO USA
[15] Ctr Hlth Sci, Aurora, CO 80045 USA
[16] Iowa State Univ, Dept Comp Sci, Ames, IA 50011 USA
[17] British Columbia Canc Agcy, Genome Sci Ctr, Vancouver, BC V5Z 4E6, Canada
[18] Univ Bari, Dept Genet & Microbiol, Bari, Italy
[19] Univ Calif Santa Cruz, Genome Sci Ctr, Santa Cruz, CA 95060 USA
[20] Wellcome Trust Sanger Inst, Hinxton CB10 1SA, Cambs, England
[21] Univ Montreal, Dept Informat & Rech Operat, Montreal, PQ H3C 3J7, Canada
[22] Inst Syst Biol, Seattle, WA 98103 USA
[23] Louisiana State Univ, Dept Comp Sci, Ctr Computat & Technol, Baton Rouge, LA 70803 USA
[24] Univ Utah, Eccles Inst Human Genet, Salt Lake City, UT 84112 USA
[25] Univ Calif Santa Cruz, Ctr Biomol Sci & Engn, Santa Cruz, CA 95064 USA
[26] Univ Colorado, Dept Prevent Med & Biometr, Denver, CO 80202 USA
[27] Stanford Univ, Dept Pathol, Stanford, CA 94305 USA
[28] Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
[29] Univ Copenhagen, Inst Biol, DK-1017 Copenhagen, Denmark
[30] Cornell Univ, Dept Mol Biol & Genet, Ithaca, NY 14853 USA
[31] Oregon Reg Primate Res Ctr, Genet Res & Informat Program, Beaverton, OR 97006 USA
[32] Univ Ulm, Inst Human Genet, D-89081 Ulm, Germany
[33] Cardiff Univ, Inst Med Genet, Cardiff CF14 4XN, Wales
[34] Max Planck Inst Evolutionary Anthropol, D-04103 Leipzig, Germany
[35] Sun Yat Sen Univ, Ctr Stem Cell Biol & Tissue Engn, Guangzhou 510080, Peoples R China
[36] S China Primate Res & Dev Ctr, Guangzhou 510080, Peoples R China
[37] Howard Hughes Med Inst, Santa Cruz, CA 95060 USA
关键词
D O I
10.1126/science.1139247
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The rhesus macaque ( Macaca mulatta) is an abundant primate species that diverged from the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely used nonhuman primate in basic and applied biomedical research. We determined the genome sequence of an Indian-origin Macaca mulatta female and compared the data with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families. A comparison of sequences from individual animals was used to investigate their underlying genetic diversity. The complete description of the macaque genome blueprint enhances the utility of this animal model for biomedical research and improves our understanding of the basic biology of the species.
引用
收藏
页码:222 / 234
页数:13
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