AN INTEGRATED METRIC PHYSICAL MAP OF HUMAN-CHROMOSOME-19

被引:173
作者
ASHWORTH, LK
BATZER, MA
BRANDRIFF, B
BRANSCOMB, E
DEJONG, P
GARCIA, E
GARNES, JA
GORDON, LA
LAMERDIN, JE
LENNON, G
MOHRENWEISER, H
OLSEN, AS
SLEZAK, T
CARRANO, AV
机构
[1] Human Genome Center, L-452, Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, Livermore, CA, 94551
[2] Roswell Park Cancer Institute, Buffalo, New York
关键词
D O I
10.1038/ng1295-422
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
A metric physical map of human chromosome 19 has been generated. The foundation of the map is sets of overlapping cosmids (contigs) generated by automated fingerprinting spanning over 95% of the euchromatin, about 50 megabases (Mb). Distances between selected cosmid clones were estimated using fluorescence in situ hybridization in sperm pronuclei, providing both order and distance between contigs. An average inter-marker separation of 230 kb has been obtained across the non-centromeric portion of the chromosome. Various types of larger insert clones were used to span gaps between contigs. Currently, the map consists of 51 'islands' containing multiple clone types, whose size, order and relative distance are known. Over 450 genes, genetic markers, sequence tagged sites (STSs), anonymous cDNAs, and other markers have been localized. In addition, EcoRI restriction maps have been generated for >41 Mb (similar to 83%) of the chromosome.
引用
收藏
页码:422 / 427
页数:6
相关论文
共 50 条
  • [31] YEAST ARTIFICIAL CHROMOSOME LIBRARIES CONTAINING LARGE INSERTS FROM MOUSE AND HUMAN DNA
    LARIN, Z
    MONACO, AP
    LEHRACH, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (10) : 4123 - 4127
  • [32] CPG ISLANDS AS GENE MARKERS IN THE HUMAN GENOME
    LARSEN, F
    GUNDERSEN, G
    LOPEZ, R
    PRYDZ, H
    [J]. GENOMICS, 1992, 13 (04) : 1095 - 1107
  • [33] AUTOMATED DNA SEQUENCING AND ANALYSIS OF 106 KILOBASES FROM HUMAN CHROMOSOME-19Q13.3
    MARTINGALLARDO, A
    MCCOMBIE, WR
    GOCAYNE, JD
    FITZGERALD, MG
    WALLACE, S
    LEE, BMB
    LAMERDIN, J
    TRAPP, S
    KELLEY, JM
    LIU, LI
    DUBNICK, M
    JOHNSTONDOW, LA
    KERLAVAGE, AR
    DEJONG, P
    CARRANO, A
    FIELDS, C
    VENTER, JC
    [J]. NATURE GENETICS, 1992, 1 (01) : 34 - 39
  • [34] THE DNA-BASED HUMAN KARYOTYPE
    MAYALL, BH
    CARRANO, AV
    MOORE, DH
    ASHWORTH, LK
    BENNETT, DE
    MENDELSOHN, ML
    [J]. CYTOMETRY, 1984, 5 (04): : 376 - 385
  • [35] PHYSICAL MAPS OF HUMAN ALPHA(1,3)FUCOSYLTRANSFERASE GENES FUT3-FUTG ON CHROMOSOMES 19P13.3 AND 11Q21
    MCCURLEY, RS
    RECINOS, A
    OLSEN, AS
    GINGRICH, JC
    SZCZEPANIAK, D
    CAMERON, HS
    KRAUSS, R
    WESTON, BW
    [J]. GENOMICS, 1995, 26 (01) : 142 - 146
  • [36] MOHRENWEISER HW, 1995, P GENOME MAPPING SEQ, P215
  • [37] STATISTICAL ISSUES IN CONSTRUCTING HIGH-RESOLUTION PHYSICAL MAPS
    NELSON, DO
    SPEED, TP
    [J]. STATISTICAL SCIENCE, 1994, 9 (03) : 334 - 354
  • [38] GENE ORGANIZATION OF THE PREGNANCY-SPECIFIC GLYCOPROTEIN REGION ON HUMAN-CHROMOSOME-19 - ASSEMBLY AND ANALYSIS OF A 700-KB COSMID CONTIG SPANNING THE REGION
    OLSEN, A
    TEGLUND, S
    NELSON, D
    GORDON, L
    COPELAND, A
    GEORGESCU, A
    CARRANO, A
    HAMMARSTROM, S
    [J]. GENOMICS, 1994, 23 (03) : 659 - 668
  • [39] OLSEN AS, 1993, BIOTECHNIQUES, V14, P116
  • [40] CRITERION FOR THE COMPLETENESS OF LARGE-SCALE PHYSICAL MAPS OF DNA
    OLSON, MV
    GREEN, P
    [J]. COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1993, 58 : 349 - 355