THE EFFECTS OF RADIATION-DAMAGE ON THE STRUCTURE OF FROZEN-HYDRATED HSV-1 CAPSIDS

被引:102
作者
CONWAY, JF
TRUS, BL
BOOY, FP
NEWCOMB, WW
BROWN, JC
STEVEN, AC
机构
[1] NIAMSD,STRUCT BIOL LAB,BETHESDA,MD 20892
[2] NIH,DIV COMP RES & TECHNOL,COMPUTAT BIOSCI & ENGN LAB,BETHESDA,MD 20892
[3] UNIV VIRGINIA,HLTH SCI CTR,DEPT MICROBIOL,CHARLOTTESVILLE,VA 22908
关键词
D O I
10.1006/jsbi.1993.1052
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Radiation damage imposes stringent limits on the information content of electron micrographs of biological specimens. In this study, we have investigated its effects on frozen, hydrated specimens and three-dimensional reconstructions calculated from cryomicrographs using capsids of herpes simplex virus as a model system. Multiple-exposure series of micrographs of both B-capsids (which contain no DNA) and C-capsids (which are fully packaged) were recorded and reconstructions were calculated from the first exposures, corresponding to a cumulative electron dose of 6-7 e(-)/Angstrom(2), and from later exposures (25-40 e(-)/Angstrom(2)). Experimental procedures were standardized to ensure that perceived changes in the micrographs and reconstructions would be attributable to radiation damage alone. The effects of the higher doses in both the micrographs and the reconstructions were expressed as a progressive blurring of the finer details, corresponding to a delocalization of structure in the ice-embedded specimens. The resolutions of the reconstructions were quantified according to a form of the Fourier ring correlation coefficient criterion, according to which the first-exposure reconstructions had resolutions of 30-36 Angstrom. The fifth-exposure B-capsid reconstruction had comparable nominal resolution, although it exhibited progressively lower correlations at higher spatial frequencies. Qualitatively similar changes in the series of C-capsid reconstructions were observed although they were more pronounced, presumably because these micrographs had lower contrast and signal-to-noise ratios. We infer that the observed changes in the images and reconstructions and the concomitant loss in contrast in the immediate vicinity of the capsid surface may reflect radiation-induced perturbation of molecular structure and/or the release of peptide fragments. Nevertheless, the observed changes are relatively subtle, at least at the operational resolution of this study; overall, our results support earlier indications (M. F. Schmid et al. J. Struct. Biol. 108, 62-68, 1992) that prospects are quite good for tilt-series reconstructions from cryoelectron micrographs, including six to eight views of the same specimen. (C) 1993 Academic Press, Inc.
引用
收藏
页码:222 / 233
页数:12
相关论文
共 45 条
[21]   QUANTITATIVE ENERGY-FILTERED ELECTRON-MICROSCOPY OF BIOLOGICAL MOLECULES IN ICE [J].
LANGMORE, JP ;
SMITH, MF .
ULTRAMICROSCOPY, 1992, 46 (1-4) :349-373
[22]   ELECTRON-MICROSCOPY OF FROZEN BIOLOGICAL SUSPENSIONS [J].
LEPAULT, J ;
BOOY, FP ;
DUBOCHET, J .
JOURNAL OF MICROSCOPY-OXFORD, 1983, 129 (JAN) :89-102
[23]   STRUCTURE OF THE HERPES-SIMPLEX VIRUS CAPSID - MOLECULAR COMPOSITION OF THE PENTONS AND THE TRIPLEXES [J].
NEWCOMB, WW ;
TRUS, BL ;
BOOY, FP ;
STEVEN, AC ;
WALL, JS ;
BROWN, JC .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 232 (02) :499-511
[24]   USE OF AR+ PLASMA-ETCHING TO LOCALIZE STRUCTURAL PROTEINS IN THE CAPSID OF HERPES-SIMPLEX VIRUS TYPE-1 [J].
NEWCOMB, WW ;
BROWN, JC .
JOURNAL OF VIROLOGY, 1989, 63 (11) :4697-4702
[25]   MAGNIFICATION CALIBRATION AND THE DETERMINATION OF SPHERICAL VIRUS DIAMETERS USING CRYO-MICROSCOPY [J].
OLSON, NH ;
BAKER, TS .
ULTRAMICROSCOPY, 1989, 30 (03) :281-297
[26]   BIOCHEMICAL STUDIES OF MATURATION OF HERPESVIRUS NUCLEOCAPSID SPECIES [J].
PERDUE, ML ;
COHEN, JC ;
RANDALL, CC ;
OCALLAGHAN, DJ .
VIROLOGY, 1976, 74 (01) :194-208
[27]   FROM LATTICE DISTORTION TO MOLECULAR DISTORTION - CHARACTERIZING AND EXPLOITING CRYSTAL DEFORMATION [J].
SAXTON, WO ;
DURR, R ;
BAUMEISTER, W .
ULTRAMICROSCOPY, 1992, 46 (1-4) :287-306
[28]   THE CORRELATION AVERAGING OF A REGULARLY ARRANGED BACTERIAL-CELL ENVELOPE PROTEIN [J].
SAXTON, WO ;
BAUMEISTER, W .
JOURNAL OF MICROSCOPY-OXFORD, 1982, 127 (AUG) :127-138
[29]   EFFECTS OF RADIATION-DAMAGE WITH 400-KV ELECTRONS ON FROZEN, HYDRATED ACTIN BUNDLES [J].
SCHMID, MF ;
JAKANA, J ;
MATSUDAIRA, P ;
CHIU, W .
JOURNAL OF STRUCTURAL BIOLOGY, 1992, 108 (01) :62-68
[30]   3-DIMENSIONAL STRUCTURE OF THE HSV1 NUCLEOCAPSID [J].
SCHRAG, JD ;
PRASAD, BVV ;
RIXON, FJ ;
CHIU, W .
CELL, 1989, 56 (04) :651-660