Draft Genome Sequence of the Grapevine Dieback Fungus Eutypa lata UCR-EL1

被引:48
作者
Blanco-Ulate, Barbara [1 ,2 ]
Rolshausen, Philippe E. [3 ]
Cantu, Dario [1 ]
机构
[1] Univ Calif Davis, Dept Viticulture & Ecol, Davis, CA 95616 USA
[2] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA
[3] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
关键词
D O I
10.1128/genomeA.00228-13
中图分类号
学科分类号
摘要
The vascular pathogen Eutypa lata, which causes Eutypa dieback in grapevines, is a major threat to grape production worldwide. Here, we present the first draft genome sequence of E. lata (UCR-EL1). The computational prediction and annotation of the protein-coding genes of UCR-EL1 provide an initial inventory of its potential virulence factors.
引用
收藏
页数:2
相关论文
共 21 条
[1]   Effects of eutypine, a toxin from Eutypa lata, on plant cell plasma membrane:: Possible subsequent implication in disease development [J].
Amborabé, BE ;
Fleurat-Lessard, P ;
Bonmort, J ;
Roustan, JP ;
Roblin, G .
PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2001, 39 (01) :51-58
[2]   Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea [J].
Amselem, Joelle ;
Cuomo, Christina A. ;
van Kan, Jan A. L. ;
Viaud, Muriel ;
Benito, Ernesto P. ;
Couloux, Arnaud ;
Coutinho, Pedro M. ;
de Vries, Ronald P. ;
Dyer, Paul S. ;
Fillinger, Sabine ;
Fournier, Elisabeth ;
Gout, Lilian ;
Hahn, Matthias ;
Kohn, Linda M. ;
Lapalu, Nicolas ;
Plummer, Kim M. ;
Pradier, Jean-Marc ;
Quevillon, Emmanuel ;
Sharon, Amir ;
Simon, Adeline ;
ten Have, Arjen ;
Tudzynski, Bettina ;
Tudzynski, Paul ;
Wincker, Patrick ;
Andrew, Marion ;
Anthouard, Veronique ;
Beever, Ross E. ;
Beffa, Rolland ;
Benoit, Isabelle ;
Bouzid, Ourdia ;
Brault, Baptiste ;
Chen, Zehua ;
Choquer, Mathias ;
Collemare, Jerome ;
Cotton, Pascale ;
Danchin, Etienne G. ;
Da Silva, Corinne ;
Gautier, Angelique ;
Giraud, Corinne ;
Giraud, Tatiana ;
Gonzalez, Celedonio ;
Grossetete, Sandrine ;
Gueldener, Ulrich ;
Henrissat, Bernard ;
Howlett, Barbara J. ;
Kodira, Chinnappa ;
Kretschmer, Matthias ;
Lappartient, Anne ;
Leroch, Michaela ;
Levis, Caroline .
PLOS GENETICS, 2011, 7 (08)
[3]   The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics [J].
Cantarel, Brandi L. ;
Coutinho, Pedro M. ;
Rancurel, Corinne ;
Bernard, Thomas ;
Lombard, Vincent ;
Henrissat, Bernard .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D233-D238
[4]   VARIATION IN THE PATHOGENICITY OF EUTYPA-LATA (= EUTYPA-ARMENIACAE) [J].
CARTER, MV ;
BOLAY, A ;
ENGLISH, H ;
RUMBOS, I .
AUSTRALIAN JOURNAL OF BOTANY, 1985, 33 (03) :361-366
[5]  
CARTER MV, 1991, 32 CAB INT
[6]   Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum [J].
Gao, Qiang ;
Jin, Kai ;
Ying, Sheng-Hua ;
Zhang, Yongjun ;
Xiao, Guohua ;
Shang, Yanfang ;
Duan, Zhibing ;
Hu, Xiao ;
Xie, Xue-Qin ;
Zhou, Gang ;
Peng, Guoxiong ;
Luo, Zhibing ;
Huang, Wei ;
Wang, Bing ;
Fang, Weiguo ;
Wang, Sibao ;
Zhong, Yi ;
Ma, Li-Jun ;
St Leger, Raymond J. ;
Zhao, Guo-Ping ;
Pei, Yan ;
Feng, Ming-Guang ;
Xia, Yuxian ;
Wang, Chengshu .
PLOS GENETICS, 2011, 7 (01)
[7]   Stimulation of Lignocellulosic Biomass Hydrolysis by Proteins of Glycoside Hydrolase Family 61: Structure and Function of a Large, Enigmatic Family [J].
Harris, Paul V. ;
Welner, Ditte ;
McFarland, K. C. ;
Re, Edward ;
Poulsen, Jens-Christian Navarro ;
Brown, Kimberly ;
Salbo, Rune ;
Ding, Hanshu ;
Vlasenko, Elena ;
Merino, Sandy ;
Xu, Feng ;
Cherry, Joel ;
Larsen, Sine ;
Lo Leggio, Leila .
BIOCHEMISTRY, 2010, 49 (15) :3305-3316
[8]   Identification and characterization of novel cytochrome P450 genes from the white-rot basidiomycete, Coriolus versicolor [J].
Ichinose, H ;
Wariishi, H ;
Tanaka, H .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2002, 58 (01) :97-105
[9]   Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 [J].
Martinez, D ;
Larrondo, LF ;
Putnam, N ;
Gelpke, MDS ;
Huang, K ;
Chapman, J ;
Helfenbein, KG ;
Ramaiya, P ;
Detter, JC ;
Larimer, F ;
Coutinho, PM ;
Henrissat, B ;
Berka, R ;
Cullen, D ;
Rokhsar, D .
NATURE BIOTECHNOLOGY, 2004, 22 (06) :695-700
[10]   Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion [J].
Martinez, Diego ;
Challacombe, Jean ;
Morgenstern, Ingo ;
Hibbett, David ;
Schmoll, Monika ;
Kubicek, Christian P. ;
Ferreira, Patricia ;
Ruiz-Duenas, Francisco J. ;
Martinez, Angel T. ;
Kersten, Phil ;
Hammel, Kenneth E. ;
Wymelenberg, Amber Vanden ;
Gaskell, Jill ;
Lindquist, Erika ;
Sabat, Grzegorz ;
BonDurant, Sandra Splinter ;
Larrondo, Luis F. ;
Canessa, Paulo ;
Vicuna, Rafael ;
Yadav, Jagjit ;
Doddapaneni, Harshavardhan ;
Subramanian, Venkataramanan ;
Pisabarro, Antonio G. ;
Lavin, Jose L. ;
Oguiza, Jose A. ;
Master, Emma ;
Henrissat, Bernard ;
Coutinho, Pedro M. ;
Harris, Paul ;
Magnuson, Jon Karl ;
Baker, Scott E. ;
Bruno, Kenneth ;
Kenealy, William ;
Hoegger, Patrik J. ;
Kuees, Ursula ;
Ramaiya, Preethi ;
Lucash, Susan ;
Salamov, Asaf ;
Shapiro, Harris ;
Tu, Hank ;
Chee, Christine L. ;
Misra, Monica ;
Xie, Gary ;
Teter, Sarah ;
Yaver, Debbie ;
James, Tim ;
Mokrejs, Martin ;
Pospisek, Martin ;
Grigoriev, Igor V. ;
Brettin, Thomas .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (06) :1954-1959