Trait stacking via targeted genome editing

被引:170
作者
Ainley, William M. [1 ]
Sastry-Dent, Lakshmi [1 ]
Welter, Mary E. [1 ]
Murray, Michael G. [1 ]
Zeitler, Bryan [2 ]
Amora, Rainier [2 ]
Corbin, David R. [1 ]
Miles, Rebecca R. [1 ]
Arnold, Nicole L. [1 ]
Strange, Tonya L. [1 ]
Simpson, Matthew A. [1 ]
Cao, Zehui [1 ]
Carroll, Carley [1 ]
Pawelczak, Katherine S. [1 ]
Blue, Ryan [1 ]
West, Kim [1 ]
Rowland, Lynn M. [1 ]
Perkins, Douglas [1 ]
Samuel, Pon [1 ]
Dewes, Cristie M. [1 ]
Shen, Liu [1 ]
Sriram, Shreedharan [1 ]
Evans, Steven L. [1 ]
Rebar, Edward J. [2 ]
Zhang, Lei [2 ]
Gregory, Phillip D. [2 ]
Urnov, Fyodor D. [2 ]
Webb, Steven R. [1 ]
Petolino, Joseph F. [1 ]
机构
[1] Dow AgroSci LLC, Indianapolis, IN USA
[2] Sangamo BioSci Inc, Richmond, CA USA
关键词
gene targeting; designed zinc finger nucleases; transgene stacking; SITE-SPECIFIC INTEGRATION; HOMOLOGOUS RECOMBINATION; TRANSGENE INTEGRATION; MULTIPLE TRANSGENES; FINGER; GENE; RESISTANCE; PLANTS; DNA; ARABIDOPSIS;
D O I
10.1111/pbi.12107
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Modern agriculture demands crops carrying multiple traits. The current paradigm of randomly integrating and sorting independently segregating transgenes creates severe downstream breeding challenges. A versatile, generally applicable solution is hereby provided: the combination of high-efficiency targeted genome editing driven by engineered zinc finger nucleases (ZFNs) with modular trait landing pads' (TLPs) that allow mix-and-match', on-demand transgene integration and trait stacking in crop plants. We illustrate the utility of nuclease-driven TLP technology by applying it to the stacking of herbicide resistance traits. We first integrated into the maize genome an herbicide resistance gene, pat, flanked with a TLP (ZFN target sites and sequences homologous to incoming DNA) using WHISKERS-mediated transformation of embryogenic suspension cultures. We established a method for targeted transgene integration based on microparticle bombardment of immature embryos and used it to deliver a second trait precisely into the TLP via cotransformation with a donor DNA containing a second herbicide resistance gene, aad1, flanked by sequences homologous to the integrated TLP along with a corresponding ZFN expression construct. Remarkably, up to 5% of the embryo-derived transgenic events integrated the aad1 transgene precisely at the TLP, that is, directly adjacent to the pat transgene. Importantly and consistent with the juxtaposition achieved via nuclease-driven TLP technology, both herbicide resistance traits cosegregated in subsequent generations, thereby demonstrating linkage of the two independently transformed transgenes. Because ZFN-mediated targeted transgene integration is becoming applicable across an increasing number of crop species, this work exemplifies a simple, facile and rapid approach to trait stacking.
引用
收藏
页码:1126 / 1134
页数:9
相关论文
共 40 条
[31]   Precise genome modification in the crop species Zea mays using zinc-finger nucleases [J].
Shukla, Vipula K. ;
Doyon, Yannick ;
Miller, Jeffrey C. ;
DeKelver, Russell C. ;
Moehle, Erica A. ;
Worden, Sarah E. ;
Mitchell, Jon C. ;
Arnold, Nicole L. ;
Gopalan, Sunita ;
Meng, Xiangdong ;
Choi, Vivian M. ;
Rock, Jeremy M. ;
Wu, Ying-Ying ;
Katibah, George E. ;
Zhifang, Gao ;
McCaskill, David ;
Simpson, Matthew A. ;
Blakeslee, Beth ;
Greenwalt, Scott A. ;
Butler, Holly J. ;
Hinkley, Sarah J. ;
Zhang, Lei ;
Rebar, Edward J. ;
Gregory, Philip D. ;
Urnov, Fyodor D. .
NATURE, 2009, 459 (7245) :437-U156
[32]   Biolistic mediated site-specific integration in rice [J].
Srivastava, V ;
Ow, DW .
MOLECULAR BREEDING, 2002, 8 (04) :345-350
[33]   High-frequency modification of plant genes using engineered zinc-finger nucleases [J].
Townsend, Jeffrey A. ;
Wright, David A. ;
Winfrey, Ronnie J. ;
Fu, Fengli ;
Maeder, Morgan L. ;
Joung, J. Keith ;
Voytas, Daniel F. .
NATURE, 2009, 459 (7245) :442-U161
[34]   Highly efficient endogenous human gene correction using designed zinc-finger nucleases [J].
Urnov, FD ;
Miller, JC ;
Lee, YL ;
Beausejour, CM ;
Rock, JM ;
Augustus, S ;
Jamieson, AC ;
Porteus, MH ;
Gregory, PD ;
Holmes, MC .
NATURE, 2005, 435 (7042) :646-651
[35]   Genome editing with engineered zinc finger nucleases [J].
Urnov, Fyodor D. ;
Rebar, Edward J. ;
Holmes, Michael C. ;
Zhang, H. Steve ;
Gregory, Philip D. .
NATURE REVIEWS GENETICS, 2010, 11 (09) :636-646
[36]   Site-specific integration of Agrobacterium T-DNA in Arabidopsis thaliana mediated by Cre recombinase [J].
Vergunst, AC ;
Jansen, LET ;
Hooykaas, PJJ .
NUCLEIC ACIDS RESEARCH, 1998, 26 (11) :2729-2734
[37]  
Wang K, 2009, METHODS MOL BIOL, V526, P29, DOI 10.1007/978-1-59745-494-0_3
[38]   NUCLEOTIDE-SEQUENCE OF THE PHOSPHINOTHRICIN N-ACETYLTRANSFERASE GENE FROM STREPTOMYCES-VIRIDOCHROMOGENES-TU494 AND ITS EXPRESSION IN NICOTIANA-TABACUM [J].
WOHLLEBEN, W ;
ARNOLD, W ;
BROER, I ;
HILLEMANN, D ;
STRAUCH, E ;
PUHLER, A .
GENE, 1988, 70 (01) :25-37
[39]   High-frequency homologous recombination in plants mediated by zinc-finger nucleases [J].
Wright, DA ;
Townsend, JA ;
Winfrey, RJ ;
Irwin, PA ;
Rajagopal, J ;
Lonosky, PM ;
Hall, BD ;
Jondle, MD ;
Voytas, DF .
PLANT JOURNAL, 2005, 44 (04) :693-705
[40]   Robust crop resistance to broadleaf and grass herbicides provided by aryloxyalkanoate dioxygenase transgenes [J].
Wright, Terry R. ;
Shan, Guomin ;
Walsh, Terence A. ;
Lira, Justin M. ;
Cui, Cory ;
Song, Ping ;
Zhuang, Meibao ;
Arnold, Nicole L. ;
Lin, Gaofeng ;
Yau, Kerrm ;
Russell, Sean M. ;
Cicchillo, Robert M. ;
Peterson, Mark A. ;
Simpson, David M. ;
Zhou, Ning ;
Ponsamuel, Jayakumar ;
Zhang, Zhanyuan .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (47) :20240-20245