Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction

被引:75
作者
Bergh, Magnus [1 ]
Huldt, Gosta [1 ]
Timneanu, Nicusor [1 ]
Maia, Filipe R. N. C. [1 ]
Hajdu, Janos [1 ,2 ]
机构
[1] Uppsala Univ, Inst Cell & Mol Biol, Lab Mol Biophys, S-75124 Uppsala, Sweden
[2] Stanford Linear Accelerator Ctr, Menlo Pk, CA USA
基金
瑞典研究理事会;
关键词
D O I
10.1017/S003358350800471X
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Detailed structural investigations on living cells are problematic because existing structural methods cannot reach high resolutions on non-reproducible objects. Illumination with an ultrashort and extremely bright X-ray pulse can outrun key damage processes over a very short period. This can be exploited to extend the diffraction signal to the highest possible resolution in flash diffraction experiments. Here we present an analysis or the interaction of a very intense and very short X-ray pulse with a living cell, using a non-equilibrium population kinetics plasma code with radiation transfer. Each element in the evolving plasma is modeled by numerous states to monitor changes in the atomic populations as a function of pulse length, wavelength, and fluence. The model treats photoionization, impact ionization, Auger decay, recombination, and inverse bremsstrahlung by solving rate equations in a self-consistent manner and describes hydrodynamic expansion through the ion sound speed, The results show that subnanometer resolutions could be reached on micron-sized cells in a diffraction-limited geometry at wavelengths between 0.75 and 1.5 nm and at fluences of 10(11)-10(12) photonS mu M (2) in less than 10 fs. Subnanometer resolutions could also be achieved with harder X-rays at higher fluences. We discuss experimental and computational strategies to obtain depth information about the object in flash diffraction experiments.
引用
收藏
页码:181 / 204
页数:24
相关论文
共 32 条
[21]   MILLISECOND X-RAY-DIFFRACTION AND THE 1ST ELECTRON-DENSITY MAP FROM LAUE PHOTOGRAPHS OF A PROTEIN CRYSTAL [J].
HAJDU, J ;
MACHIN, PA ;
CAMPBELL, JW ;
GREENHOUGH, TJ ;
CLIFTON, IJ ;
ZUREK, S ;
GOVER, S ;
JOHNSON, LN ;
ELDER, M .
NATURE, 1987, 329 (6135) :178-181
[22]   FAST CRYSTALLOGRAPHY AND TIME-RESOLVED STRUCTURES [J].
HAJDU, J ;
ANDERSSON, I .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1993, 22 :467-498
[23]  
Hau-Riege SP, 2005, PHYS REV E, V71, DOI 10.1103/PhysRevE.71.061919
[24]   Dynamics of biological molecules irradiated by short x-ray pulses [J].
Hau-Riege, SP ;
London, RA ;
Szoke, A .
PHYSICAL REVIEW E, 2004, 69 (05) :12-1
[25]   Soft-x-ray free-electron-laser interaction with materials [J].
Hau-Riege, Stefan P. ;
London, Richard A. ;
Chapman, Henry N. ;
Bergh, Magnus .
PHYSICAL REVIEW E, 2007, 76 (04)
[26]  
HAURIEGE SP, 2007, PHYS REV LETT, V98
[27]  
HELDT G, 2003, J STRUCTURAL BIOL, V144, P171
[28]   THE POTENTIAL AND LIMITATIONS OF NEUTRONS, ELECTRONS AND X-RAYS FOR ATOMIC-RESOLUTION MICROSCOPY OF UNSTAINED BIOLOGICAL MOLECULES [J].
HENDERSON, R .
QUARTERLY REVIEWS OF BIOPHYSICS, 1995, 28 (02) :171-193
[29]   RADIATION-DAMAGE IN PROTEIN CRYSTALLOGRAPHY [J].
HENDRICKSON, WA .
JOURNAL OF MOLECULAR BIOLOGY, 1976, 106 (03) :889-893
[30]   Imaging atom clusters by hard X-ray free-electron lasers [J].
Jurek, Z ;
Oszlányi, G ;
Faigel, G .
EUROPHYSICS LETTERS, 2004, 65 (04) :491-497