The Bacterial Nanorecorder: Engineering E. coli to Function as a Chemical Recording Device

被引:6
作者
Bhomkar, Prasanna [1 ]
Materi, Wayne [1 ]
Wishart, David S. [1 ,2 ,3 ]
机构
[1] Natl Inst Nanotechnol, Edmonton, AB, Canada
[2] Univ Alberta, Dept Comp Sci, Edmonton, AB, Canada
[3] Univ Alberta, Dept Biol Sci, Edmonton, AB, Canada
来源
PLOS ONE | 2011年 / 6卷 / 11期
基金
加拿大健康研究院; 加拿大自然科学与工程研究理事会;
关键词
ESCHERICHIA-COLI; CELL-DIVISION; OPTIMIZATION; BISTABILITY; EXPRESSION; PLACEMENT; INHIBITOR; MINC; SITE;
D O I
10.1371/journal.pone.0027559
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Synthetic biology is an emerging branch of molecular biology that uses synthetic genetic constructs to create man-made cells or organisms that are capable of performing novel and/or useful applications. Using a synthetic chemically sensitive genetic toggle switch to activate appropriate fluorescent protein indicators (GFP, RFP) and a cell division inhibitor (minC), we have created a novel E. coli strain that can be used as a highly specific, yet simple and inexpensive chemical recording device. This biological "nanorecorder" can be used to determine both the type and the time at which a brief chemical exposure event has occurred. In particular, we show that the short-term exposure (15-30 min) of cells harboring this synthetic genetic circuit to small molecule signals (anhydrotetracycline or IPTG) triggered long-term and uniform cell elongation, with cell length being directly proportional to the time elapsed following a brief chemical exposure. This work demonstrates that facile modification of an existing genetic toggle switch can be exploited to generate a robust, biologically-based "nanorecorder" that could potentially be adapted to detect, respond and record a wide range of chemical stimuli that may vary over time and space.
引用
收藏
页数:10
相关论文
共 29 条
[21]   Optimization of DsRed production in Escherichia coli:: Effect of ribosome binding site sequestration on translation efficiency [J].
Pfleger, BF ;
Fawzi, NJ ;
Keasling, JD .
BIOTECHNOLOGY AND BIOENGINEERING, 2005, 92 (05) :553-558
[22]   MinDE-dependent pole-to-pole oscillation of division inhibitor MinC in Escherichia coli [J].
Raskin, DM ;
de Boer, PAJ .
JOURNAL OF BACTERIOLOGY, 1999, 181 (20) :6419-6424
[23]   A universal RNAi-based logic evaluator that operates in mammalian cells [J].
Rinaudo, Keller ;
Bleris, Leonidas ;
Maddamsetti, Rohan ;
Subramanian, Sairam ;
Weiss, Ron ;
Benenson, Yaakov .
NATURE BIOTECHNOLOGY, 2007, 25 (07) :795-801
[24]  
Stupak E E, 2010, Genetika, V46, P610
[25]   A Synthetic Genetic Edge Detection Program [J].
Tabor, Jeffrey J. ;
Salis, Howard M. ;
Simpson, Zachary Booth ;
Chevalier, Aaron A. ;
Levskaya, Anselm ;
Marcotte, Edward M. ;
Voigt, Christopher A. ;
Ellington, Andrew D. .
CELL, 2009, 137 (07) :1272-1281
[26]   Emergent bistability by a growth-modulating positive feedback circuit [J].
Tan, Cheemeng ;
Marguet, Philippe ;
You, Lingchong .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :842-848
[27]   Bistability, Epigenetics, and Bet-Hedging in Bacteria [J].
Veening, Jan-Willem ;
Smits, Wiep Klaas ;
Kuipers, Oscar P. .
ANNUAL REVIEW OF MICROBIOLOGY, 2008, 62 :193-210
[28]   A synthetic mammalian electro-genetic transcription circuit [J].
Weber, Wilfried ;
Luzi, Stefan ;
Karlsson, Maria ;
Sanchez-Bustamante, Carlota Diaz ;
Frey, Urs ;
Hierlemann, Andreas ;
Fussenegger, Martin .
NUCLEIC ACIDS RESEARCH, 2009, 37 (04)
[29]   Optimization of a Whole-Cell Cadmium Sensor with a Toggle Gene Circuit [J].
Wu, Cindy H. ;
Le, David ;
Mulchandani, Ashok ;
Chen, Wilfred .
BIOTECHNOLOGY PROGRESS, 2009, 25 (03) :898-903