Effects of Intra- and Post-Operative Ischemia on the Metabolic Profile of Clinical Liver Tissue Specimens Monitored by NMR

被引:30
作者
Cacciatore, Stefano [1 ,2 ]
Hu, Xiaoyu [2 ]
Viertler, Christian [3 ]
Kap, Marcel [4 ]
Bernhardt, Gerwin A. [5 ]
Mischinger, Hans-Joerg [5 ]
Riegman, Peter [4 ]
Zatloukal, Kurt [3 ]
Luchinat, Claudio [1 ,6 ]
Turano, Paola [1 ,6 ]
机构
[1] Univ Florence, CERM, I-50019 Sesto Fiorentino, Italy
[2] Fiorgen Fdn, I-50019 Sesto Fiorentino, Italy
[3] Med Univ Graz, Inst Pathol, A-8036 Graz, Austria
[4] Erasmus MC, Dept Pathol, NL-3015 CA Rotterdam, Netherlands
[5] Med Univ Graz, Div Gen Surg, Dept Surg, A-8036 Graz, Austria
[6] Univ Florence, Dept Chem, I-50019 Sesto Fiorentino, Italy
关键词
tissue metabolomics; ischemia; NMR; HR-MAS; liver; preanalytics; PERSONALIZED MEDICINE; BREAST-CANCER; COLORECTAL-CANCER; SYSTEMS BIOLOGY; IDENTIFICATION; SPECTROSCOPY; METABONOMICS; FINGERPRINT; PHENOTYPES; SIGNATURE;
D O I
10.1021/pr400702d
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Metabolomic profiles of tissues could greatly contribute to advancements in personalized medicine but are influenced by differences in adopted preanalytical procedures; nonhomogeneous pre- and post-excision ischemia times are potential sources of variability. In this study, we monitored the impact of ischemia on the metabolic profiles, acquired with high-resolution magic-angle-spinning H-1 NMR, of 162 human liver samples collected during and up to 6 h after routine surgery. The profiles changed significantly as a function of intraoperative warm ischemia (WI) and postresection cold ischemia (CI) time, with significant variations in the concentration of the same 16 metabolites. Therefore, a tight control of the preanalytical phase is essential for reliable metabolomic analyses of liver diseases. The NMR profiles provide a reliable "fingerprint" of ischemia and have predictive value: the best-performing predictive models are found to discriminate extreme time points of CI (0' vs 360') in the training set with cross-validation accuracy of similar to 90%; samples in the validation cohort can discriminate short (<= 60') from long (>= 180') CI with an accuracy of similar to 80%. For WI, the corresponding figures are 95.6 and 92%, respectively. Therefore, ischemia NMR profiles might become a tool for tissue quality control in biobanks.
引用
收藏
页码:5723 / 5729
页数:7
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