DNA methylation profiling in the clinic: applications and challenges

被引：585

作者：

Heyn, Holger ^{[1
]}

Esteller, Manel ^{[1
,2
,3
]}

机构：

[1] Bellvitge Biomed Res Inst IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona 08908, Catalonia, Spain

[2] Univ Barcelona, Sch Med, Dept Physiol Sci 2, E-08036 Barcelona, Catalonia, Spain

[3] ICREA, Barcelona 08010, Catalonia, Spain

来源：

NATURE REVIEWS GENETICS | 2012年 / 13卷 / 10期

基金：

欧洲研究理事会;

关键词：

CPG ISLAND HYPERMETHYLATION; SUBEROYLANILIDE HYDROXAMIC ACID; HISTONE DEACETYLASE INHIBITOR; POLYMERASE-CHAIN-REACTION; PROSTATE-CANCER PATIENTS; PROMOTER HYPERMETHYLATION; HIGH-THROUGHPUT; COLORECTAL-CANCER; EPIGENETIC MODIFICATIONS; GSTP1; METHYLATION;

D O I：

10.1038/nrg3270

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Knowledge of epigenetic alterations in disease is rapidly increasing owing to the development of genome-wide techniques for their identification. The ever-growing number of genes that show epigenetic alterations in disease emphasizes the crucial role of these epigenetic alterations - particularly DNA methylation - for future diagnosis, prognosis and prediction of response to therapies. This Review focuses on epigenetic profiling, which has started to be of clinical value in cancer and may in the future be extended to other diseases, such as neurological and autoimmune disorders.

引用

页码：679 / 692

页数：14

共 139 条

[101] Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis [J].

Meissner, A ;

Gnirke, A ;

Bell, GW ;

Ramsahoye, B ;

Lander, ES ;

Jaenisch, R .

NUCLEIC ACIDS RESEARCH, 2005, 33 (18) :5868-5877

[102] DNA methylation for subtype classification and prediction of treatment outcome in patients with childhood acute lymphoblastic leukemia [J].

Milani, Lili ;

Lundmark, Anders ;

Kiialainen, Anna ;

Nordlund, Jessica ;

Flaegstad, Trond ;

Forestier, Erik ;

Heyman, Mats ;

Jonmundsson, Gudmundur ;

Kanerva, Jukka ;

Schmiegelow, Kjeld ;

Soderhall, Stefan ;

Gustafsson, Mats G. ;

Lonnerholm, Gudmar ;

Syvanen, Ann-Christine .

BLOOD, 2010, 115 (06) :1214-1225

[103] Hypermethylation of the human glutathione S-transferase-π gene (GSTP1) CpG island is present in a subset of proliferative inflammatory atrophy lesions but not in normal or hyperplastic epithelium of the prostate -: A detailed study using laser-capture-microdissection [J].

Nakayama, M ;

Bennett, CJ ;

Hicks, JL ;

Epstein, JI ;

Platz, EA ;

Nelson, WG ;

De Marzo, AM .

AMERICAN JOURNAL OF PATHOLOGY, 2003, 163 (03) :923-933

[104] Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma [J].

Noushmehr, Houtan ;

Weisenberger, Daniel J. ;

Diefes, Kristin ;

Phillips, Heidi S. ;

Pujara, Kanan ;

Berman, Benjamin P. ;

Pan, Fei ;

Pelloski, Christopher E. ;

Sulman, Erik P. ;

Bhat, Krishna P. ;

Verhaak, Roel G. W. ;

Hoadley, Katherine A. ;

Hayes, D. Neil ;

Perou, Charles M. ;

Schmidt, Heather K. ;

Ding, Li ;

Wilson, Richard K. ;

Van Den Berg, David ;

Shen, Hui ;

Bengtsson, Henrik ;

Neuvial, Pierre ;

Cope, Leslie M. ;

Buckley, Jonathan ;

Herman, James G. ;

Baylin, Stephen B. ;

Laird, Peter W. ;

Aldape, Kenneth .

CANCER CELL, 2010, 17 (05) :510-522

[105]

Padar A, 2003, CLIN CANCER RES, V9, P4730

[106] Epigenetic modifications and human disease [J].

Portela, Anna ;

Esteller, Manel .

NATURE BIOTECHNOLOGY, 2010, 28 (10) :1057-1068

[107] Identification of Type 1 Diabetes-Associated DNA Methylation Variable Positions That Precede Disease Diagnosis [J].

Rakyan, Vardhman K. ;

Beyan, Huriya ;

Down, Thomas A. ;

Hawa, Mohammed I. ;

Maslau, Siarhei ;

Aden, Deeqo ;

Daunay, Antoine ;

Busato, Florence ;

Mein, Charles A. ;

Manfras, Burkhard ;

Dias, Kerith-Rae M. ;

Bell, Christopher G. ;

Tost, Joerg ;

Boehm, Bernhard O. ;

Beck, Stephan ;

Leslie, R. David .

PLOS GENETICS, 2011, 7 (09)

[108] 14-3-3σ Methylation in pretreatment serum circulating DNA of cisplatin-plus-gemcitabine-treated advanced non-small-cell lung cancer patients predicts survival:: The Spanish Lung Cancer Group [J].

Ramirez, JL ;

Rosell, R ;

Taron, M ;

Sanchez-Ronco, M ;

Alberola, V ;

Peñas, RD ;

Sanchez, JM ;

Moran, T ;

Camps, C ;

Massuti, B ;

Sanchez, JJ ;

Salazar, F ;

Catot, S .

JOURNAL OF CLINICAL ONCOLOGY, 2005, 23 (36) :9105-9112

[109] Promoter hypermethylation of GSTPI, AR, and 14-3-3σ in serum of prostate cancer patients and its clinical relevance [J].

Reibenwein, Jochen ;

Pits, Dietmar ;

Horak, Peter ;

Tomicek, Birgit ;

Goldner, Gregor ;

Worel, Nina ;

Elandt, Katarzyna ;

Krainer, Michael .

PROSTATE, 2007, 67 (04) :427-432

[110] Cancer epigenetics reaches mainstream oncology [J].

Rodriguez-Paredes, Manuel ;

Esteller, Manel .

NATURE MEDICINE, 2011, 17 (03) :330-339

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