Catalytic promiscuity and the divergent evolution of DNA repair enzymes

被引:106
作者
O'Brien, PJ [1 ]
机构
[1] Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA
关键词
D O I
10.1021/cr040481v
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
This review discusses the known evolutionary relationships among DNA repair enzymes and between DNA repair enzymes and other cellular enzymes, focusing on the divergence of enzymatic function. Discussions include: overview of catalytic promiscuity and the evolutionary diversification of enzymes; chemical landscape for DNA damage and repair; overview of DNA repair pathways; examples of DNA repair enzymes that exhibit catalytic promiscuity; mechanistically diverse DNA repair enzyme superfamilies; and changes in substrate and reaction specificity of DNA repair enzymes.
引用
收藏
页码:720 / 752
页数:33
相关论文
共 332 条
[11]  
Aravind L., 2000, GENOME BIOL, V1, DOI DOI 10.1186/GB-2000-1-4-RESEARCH0007
[12]   A single side chain prevents Escherichia coli DNA polymerase I (Klenow fragment) from incorporating ribonucleotides [J].
Astatke, M ;
Ng, KM ;
Grindley, NDF ;
Joyce, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (07) :3402-3407
[13]   FUNCTIONALLY DIVERSE ENZYME SUPERFAMILY THAT ABSTRACTS THE ALPHA-PROTONS OF CARBOXYLIC-ACIDS [J].
BABBITT, PC ;
MRACHKO, GT ;
HASSON, MS ;
HUISMAN, GW ;
KOLTER, R ;
RINGE, D ;
PETSKO, GA ;
KENYON, GL ;
GERLT, JA .
SCIENCE, 1995, 267 (5201) :1159-1161
[14]   Overproduction of DNA cytosine methyltransferases causes methylation and C->T mutations at non-canonical sites [J].
Bandaru, B ;
Gopal, J ;
Bhagwat, AS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1996, 271 (13) :7851-7859
[15]   Lesions in DNA: hurdles for polymerases [J].
Baynton, K ;
Fuchs, RPP .
TRENDS IN BIOCHEMICAL SCIENCES, 2000, 25 (02) :74-79
[16]   L-CELL DNA-LIGASE JOINS RNA TO DNA ON A DNA-TEMPLATE [J].
BEDOWS, E ;
WACHSMAN, JT ;
GUMPORT, RI .
BIOCHEMISTRY, 1977, 16 (10) :2231-2235
[17]   Two divalent metal ions in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1: Implications for the catalytic mechanism [J].
Beernink, PT ;
Segelke, BW ;
Hadi, MZ ;
Erzberger, JP ;
Wilson, DM ;
Rupp, B .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (04) :1023-1034
[18]   Methanobacterium thermoformicicum thymine DNA mismatch glycosylase:: conversion of an N-glycosylase to an AP lyase [J].
Begley, TJ ;
Cunningham, RP .
PROTEIN ENGINEERING, 1999, 12 (04) :333-340
[19]   Escherichia coli nucleoside diphosphate kinase does not act as a uracil-processing DNA repair nuclease [J].
Bennett, SE ;
Chen, CY ;
Mosbaugh, DW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) :6391-6396
[20]   Release of normal bases from intact DNA by a native DNA repair enzyme [J].
Berdal, KG ;
Johansen, RF ;
Seeberg, E .
EMBO JOURNAL, 1998, 17 (02) :363-367